miR840
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed6.0842240.4517876.1567360.5279
10day-seedling3.832130.2716375.640290.230258
14day-seedling4.484630.6229275.659040.272731
25day-aerial3.732470.305285.450230.21887
35day-aerial3.757080.3888965.541530.302543
42day-rosette3.537520.4744635.664860.412514
42day-stem3.609030.4258395.576530.111729
53day-rosette4.089220.18245.931720.202643
53day-stem4.041620.4145845.463520.345027
53day-inflores4.308710.336486.0071860.232387
53day-silique4.28810.07725735.430690.0370711
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00025.61.752.98e-1-0.531.663.17e-1-0.5
21.00032.664.693.88e-2-1.414.823.54e-2-1.45
31.00026.972.691.55e-1-0.811.922.64e-1-0.58
10day-seedling11.00023.610.745.85e-4-3.235.242.64e-2-1.58
21.00022.789.531.35e-3-2.873.727.59e-2-1.12
31.00022.6711.33.97e-4-3.44.594.16e-2-1.38
14day-seedling11.00023.8810.317.89e-4-3.13.667.89e-2-1.1
20.99826.498.383.00e-3-2.525.472.25e-2-1.65
31.00024.066.271.29e-2-1.894.145.69e-2-1.25
25day-aerial10.99923.6210.765.77e-4-3.2453.12e-2-1.51
20.99925.9411.892.63e-4-3.585.651.99e-2-1.7
30.99923.779.891.05e-3-2.984.334.98e-2-1.3
35day-aerial10.99623.999.531.35e-3-2.873.996.28e-2-1.2
20.98924.8312.112.26e-4-3.655.981.59e-2-1.8
30.99823.8710.686.11e-4-3.214.494.45e-2-1.35
42day-rosette10.99823.8110.278.12e-4-3.093.161.12e-1-0.95
20.99924.339.951.01e-3-34.265.22e-2-1.28
31.00024.9811.453.57e-4-3.455.881.69e-2-1.77
42day-stem11.00021.931.248.29e-1-3.824.933.29e-1-1.48
20.99922.399.851.84e-1-2.964.355.75e-1-1.29
30.99824.6511.274.62e-1-3.394.963.22e-1-1.49
53day-rosette11.00023.028.971.99e-3-2.72.981.27e-1-0.9
21.00022.310.019.71e-4-3.014.295.10e-2-1.29
31.00022.9210.039.56e-4-3.023.379.65e-2-1.02
53day-stem11.00024.811.383.75e-4-3.434.863.44e-2-1.46
21.00023.538.752.32e-3-2.634.15.84e-2-1.23
30.99826.919.311.58e-3-2.86.351.22e-2-1.91
53day-inflores10.99922.689.291.59e-3-2.84.145.68e-2-1.25
20.99922.327.694.85e-3-2.313.131.14e-1-0.94
30.99820.776.948.12e-3-2.092.351.95e-1-0.71
53day-silique11.00029.159.311.58e-3-2.85.352.44e-2-1.61
21.00028.158.862.15e-3-2.675.152.81e-2-1.55
31.00027.838.862.15e-3-2.675.132.86e-2-1.54
NGS expression data
Expression of miR840 transcript in NGS data
Sequences
miRNA transcript
CGUAAAGCAGGUGAUUCACCAAUUUAGGUUUACAUCCACAGUGUGGAAGACACUGAAGGACCUAAACUAACAAAGGUAAACGGCUCAGUGUGCGGGGUAUUACACUCGGUUUAAUGUCUGAAUGCGAUAAUCCGCACGAUGAUCUCUUUAUCUUUGUUUGUUUAGGUCCCUUAGUUUCUUCUAUACCGUGAAUCCAAUCCUGUAUUGGAUGAGCUGGUUUAUGACC
Short sequences
sequencetypearmstartend
ACACUGAAGGACCUAAACUAAC
miRNA5071
CTAAACTAACAAAGGTAAACGGCTCAGT
primer5p6289
AGAAGAAACTAAGGGACCTAAACAAACA
primer3p155182

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR840 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 226 nt
MFE = -99.69 kcal/mol

COMMENTS