Expression
Switch to: PP2A
In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-9).
The expression values are rescaled. Read more
Expression Data
Raw Data
Development stage | rep | R2 | Ct | actin | PP2A | ||||
---|---|---|---|---|---|---|---|---|---|
ΔCt | 2^(-ΔCt) | log10 | ΔCt | 2^(-ΔCt) | log10 | ||||
seed | 1 | 1.000 | 25.6 | 1.75 | 2.98e-1 | -0.53 | 1.66 | 3.17e-1 | -0.5 |
2 | 1.000 | 32.66 | 4.69 | 3.88e-2 | -1.41 | 4.82 | 3.54e-2 | -1.45 | |
3 | 1.000 | 26.97 | 2.69 | 1.55e-1 | -0.81 | 1.92 | 2.64e-1 | -0.58 | |
10day-seedling | 1 | 1.000 | 23.6 | 10.74 | 5.85e-4 | -3.23 | 5.24 | 2.64e-2 | -1.58 |
2 | 1.000 | 22.78 | 9.53 | 1.35e-3 | -2.87 | 3.72 | 7.59e-2 | -1.12 | |
3 | 1.000 | 22.67 | 11.3 | 3.97e-4 | -3.4 | 4.59 | 4.16e-2 | -1.38 | |
14day-seedling | 1 | 1.000 | 23.88 | 10.31 | 7.89e-4 | -3.1 | 3.66 | 7.89e-2 | -1.1 |
2 | 0.998 | 26.49 | 8.38 | 3.00e-3 | -2.52 | 5.47 | 2.25e-2 | -1.65 | |
3 | 1.000 | 24.06 | 6.27 | 1.29e-2 | -1.89 | 4.14 | 5.69e-2 | -1.25 | |
25day-aerial | 1 | 0.999 | 23.62 | 10.76 | 5.77e-4 | -3.24 | 5 | 3.12e-2 | -1.51 |
2 | 0.999 | 25.94 | 11.89 | 2.63e-4 | -3.58 | 5.65 | 1.99e-2 | -1.7 | |
3 | 0.999 | 23.77 | 9.89 | 1.05e-3 | -2.98 | 4.33 | 4.98e-2 | -1.3 | |
35day-aerial | 1 | 0.996 | 23.99 | 9.53 | 1.35e-3 | -2.87 | 3.99 | 6.28e-2 | -1.2 |
2 | 0.989 | 24.83 | 12.11 | 2.26e-4 | -3.65 | 5.98 | 1.59e-2 | -1.8 | |
3 | 0.998 | 23.87 | 10.68 | 6.11e-4 | -3.21 | 4.49 | 4.45e-2 | -1.35 | |
42day-rosette | 1 | 0.998 | 23.81 | 10.27 | 8.12e-4 | -3.09 | 3.16 | 1.12e-1 | -0.95 |
2 | 0.999 | 24.33 | 9.95 | 1.01e-3 | -3 | 4.26 | 5.22e-2 | -1.28 | |
3 | 1.000 | 24.98 | 11.45 | 3.57e-4 | -3.45 | 5.88 | 1.69e-2 | -1.77 | |
42day-stem | 1 | 1.000 | 21.93 | 1.24 | 8.29e-1 | -3.82 | 4.93 | 3.29e-1 | -1.48 |
2 | 0.999 | 22.39 | 9.85 | 1.84e-1 | -2.96 | 4.35 | 5.75e-1 | -1.29 | |
3 | 0.998 | 24.65 | 11.27 | 4.62e-1 | -3.39 | 4.96 | 3.22e-1 | -1.49 | |
53day-rosette | 1 | 1.000 | 23.02 | 8.97 | 1.99e-3 | -2.7 | 2.98 | 1.27e-1 | -0.9 |
2 | 1.000 | 22.3 | 10.01 | 9.71e-4 | -3.01 | 4.29 | 5.10e-2 | -1.29 | |
3 | 1.000 | 22.92 | 10.03 | 9.56e-4 | -3.02 | 3.37 | 9.65e-2 | -1.02 | |
53day-stem | 1 | 1.000 | 24.8 | 11.38 | 3.75e-4 | -3.43 | 4.86 | 3.44e-2 | -1.46 |
2 | 1.000 | 23.53 | 8.75 | 2.32e-3 | -2.63 | 4.1 | 5.84e-2 | -1.23 | |
3 | 0.998 | 26.91 | 9.31 | 1.58e-3 | -2.8 | 6.35 | 1.22e-2 | -1.91 | |
53day-inflores | 1 | 0.999 | 22.68 | 9.29 | 1.59e-3 | -2.8 | 4.14 | 5.68e-2 | -1.25 |
2 | 0.999 | 22.32 | 7.69 | 4.85e-3 | -2.31 | 3.13 | 1.14e-1 | -0.94 | |
3 | 0.998 | 20.77 | 6.94 | 8.12e-3 | -2.09 | 2.35 | 1.95e-1 | -0.71 | |
53day-silique | 1 | 1.000 | 29.15 | 9.31 | 1.58e-3 | -2.8 | 5.35 | 2.44e-2 | -1.61 |
2 | 1.000 | 28.15 | 8.86 | 2.15e-3 | -2.67 | 5.15 | 2.81e-2 | -1.55 | |
3 | 1.000 | 27.83 | 8.86 | 2.15e-3 | -2.67 | 5.13 | 2.86e-2 | -1.54 |
NGS expression data
Expression of miR840 transcript in NGS dataSequences
miRNA transcript
CGUAAAGCAGGUGAUUCACCAAUUUAGGUUUACAUCCACAGUGUGGAAGACACUGAAGGACCUAAACUAACAAAGGUAAACGGCUCAGUGUGCGGGGUAUUACACUCGGUUUAAUGUCUGAAUGCGAUAAUCCGCACGAUGAUCUCUUUAUCUUUGUUUGUUUAGGUCCCUUAGUUUCUUCUAUACCGUGAAUCCAAUCCUGUAUUGGAUGAGCUGGUUUAUGACC
Short sequences
sequence | type | arm | start | end |
---|---|---|---|---|
ACACUGAAGGACCUAAACUAAC | miRNA | 50 | 71 | |
CTAAACTAACAAAGGTAAACGGCTCAGT | primer | 5p | 62 | 89 |
AGAAGAAACTAAGGGACCTAAACAAACA | primer | 3p | 155 | 182 |
For experimental procedure see:Materials and Methods
Cross-references
miRBase | miRBase record |
ASRP | ASRP record |
PMRD | PMRD record |
TAIR | TAIR record |
PubMed Entrez | The most up-to-date article(s) about miR840 found in PubMed |