miR870
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

Download CSV Table

Expression Data
Development stageactinPP2A
LogSDLogSD
seed2.93831.184093.033980.991828
10day-seedling0.305990.1775052.114150.0455422
14day-seedling0.6165302.616690
25day-aerialN/D-N/D-
35day-aerial0.497580.5020442.328560.457501
42day-rosette0.150390.5585962.057780.885858
42day-stem0.223890.8084581.946390.705465
53day-rosette0.404780.6082572.247290.482081
53day-stem0.6263502.027040
53day-inflores0.198830.8102391.660640.8934
53day-silique2.840850.1775773.983440.164945
Raw Expression Data

Download CSV Table

Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed1----N/D--N/D
21.00038.6910.715.96e-4-3.2210.855.44e-4-3.26
31.00040.5516.271.26e-5-4.915.52.15e-5-4.67
10day-seedling11.00034.5221.663.02e-7-6.5216.161.36e-5-4.87
21.00035.4622.222.05e-7-6.6916.41.15e-5-4.94
31.00034.2122.841.34e-7-6.8716.121.40e-5-4.85
14day-seedling10.99934.7821.214.14e-7-6.3814.564.14e-5-4.38
2----N/D--N/D
3----N/D--N/D
25day-aerial1----N/D--N/D
2----N/D--N/D
3----N/D--N/D
35day-aerial10.99834.4419.989.67e-7-6.0114.444.49e-5-4.35
2----N/D--N/D
31.00035.9722.781.39e-7-6.8616.591.01e-5-4.99
42day-rosette10.99534.9821.443.51e-7-6.4514.344.83e-5-4.32
2----N/D--N/D
31.00037.5924.075.69e-8-7.2418.52.70e-6-5.57
42day-stem10.99234.2722.581.59e-7-6.817.276.33e-6-5.2
20.99932.3319.791.13e-1-5.9614.255.17e-1-4.29
31.00038.5425.162.67e-8-7.5718.852.11e-6-5.68
53day-rosette11.00034.4620.417.18e-7-6.1414.424.56e-5-4.34
21.00033.421.114.41e-7-6.3615.42.32e-5-4.63
31.00037.124.215.17e-8-7.2917.555.21e-6-5.28
53day-stem1----N/D--N/D
20.99835.9521.174.23e-7-6.3716.521.06e-5-4.97
3----N/D--N/D
53day-inflores10.99832.8919.51.35e-6-5.8714.344.81e-5-4.32
21.00039.0324.44.52e-8-7.3419.841.06e-6-5.97
30.98037.4423.627.78e-8-7.1119.031.87e-6-5.73
53day-silique11.00033.8814.035.96e-5-4.2210.089.22e-4-3.04
21.00032.4413.151.10e-4-3.969.441.44e-3-2.84
31.00033.2414.275.07e-5-4.2910.536.74e-4-3.17
NGS expression data
Expression of miR870 transcript in NGS data
Sequences
miRNA transcript
CUUGCUUUAGAGACGAACGACACGAUUAUUCGUAAAGAAACAUUUGGUCUUCAGAAGAAGAAGAUUAACGGAGACGUUGCUGGCUCAGGUCACCGGGAAAAGCUUUUAUUUUUUUCUGGUCGAUCGAAGAACAUCAAAUUAGAAUGUGAUGCAAAACUUAGACUCCUAACAUUUGCAACACAAUCUAAUUUGGUGUUUCUUCGAUCUGGGUUCGUC
Short sequences
sequencetypearmstartend
UAAUUUGGUGUUUCUUCGAUC
miRNA186206
TTGCTTTAGAGACGAACGACACG
primer5p224
ACGAACCCAGATCGAAGAAACA
primer3p194215

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR870 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 216 nt
MFE = -77.80 kcal/mol

COMMENTS