miR863
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

Download CSV Table

Expression Data
Development stageactinPP2A
LogSDLogSD
seed5.454310.1230145.526820.247788
10day-seedling5.771120.1566697.5792740.0667467
14day-seedling7.07016140.7654538.336120.420165
25day-aerial6.682230.0347898.470750.0693211
35day-aerial6.4175230.3984438.794780.145844
42day-rosette6.0531080.7882928.18730.380756
42day-stem5.560670.1254227.4478710.367355
53day-rosette6.1716030.329838.014110.276712
53day-stem5.739790.348357.3336780.141786
53day-inflores5.234060.09293046.671850.189706
53day-silique3.900450.2516315.043040.267251
Raw Expression Data

Download CSV Table

Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00029.395.532.16e-2-1.675.452.29e-2-1.64
21.00033.135.152.81e-2-1.555.292.56e-2-1.59
31.00028.994.723.80e-2-1.423.956.48e-2-1.19
10day-seedling11.00016.43.548.58e-2-1.07-1.953.87e+00.59
21.00017.374.125.74e-2-1.24-1.693.23e+00.51
31.00015.954.584.18e-2-1.38-2.134.38e+00.64
14day-seedling10.99915.932.361.95e-1-0.71-4.291.95e+11.29
20.99517.9-0.211.16e+00.06-3.128.69e+00.94
30.99316.58-1.212.31e+00.36-3.351.02e+11.01
25day-aerial10.99613.941.084.73e-1-0.33-4.682.56e+11.41
20.99715.21.164.49e-1-0.35-5.093.40e+11.53
30.99914.810.935.25e-1-0.28-4.632.48e+11.4
35day-aerial11.00014.50.049.73e-1-0.01-5.54.52e+11.65
21.00015.52.781.46e-1-0.84-3.351.02e+11.01
30.99213.450.268.34e-1-0.08-5.936.08e+11.78
42day-rosette10.99715.782.252.11e-1-0.68-4.862.90e+11.46
21.00017.733.359.81e-2-1.01-2.345.07e+00.71
31.00014.621.14.68e-1-0.33-4.472.22e+11.35
42day-stem10.99916.64.913.32e-1-1.48-0.41.32e+00.12
21.00016.834.295.12e-1-1.3-1.272.40e+00.38
31.00016.883.518.84e-1-1.54-2.866.99e+00.84
53day-rosette11.00015.611.563.38e-1-0.47-4.422.15e+11.33
21.00015.262.971.28e-1-0.89-2.756.72e+00.83
31.00016.613.727.57e-2-1.12-2.937.64e+00.88
53day-stem10.99918.575.142.83e-2-1.55-1.372.59e+00.41
21.00019.294.514.38e-2-1.36-0.141.10e+00.04
31.00020.512.91.34e-1-0.87-0.051.04e+00.02
53day-inflores10.99918.935.542.15e-2-1.670.387.67e-1-0.12
21.00020.786.151.41e-2-1.851.593.31e-1-0.48
31.00019.715.881.69e-2-1.771.294.08e-1-0.39
53day-silique11.00029.759.91.05e-3-2.985.951.62e-2-1.79
21.00029.029.731.18e-3-2.936.031.53e-2-1.81
31.00030.2311.264.09e-4-3.397.525.43e-3-2.27
NGS expression data
Expression of miR863 transcript in NGS data
Sequences
miRNA transcript
GAGACCAACAGCUACGUAUUAGAGGAUUUCGACCUGACCAGAAGGAGUUAACCUACAAAGUUAAUUCUCAGAUAUUCUUGACUCAUAAGAUGUAGAAACUAGAGAAGAGUUUGGGGGAAAACUCUUUCUUAUGUCUUGUUGAUCUCAAUAGCAUUGAUACAAUGUAUAUAUAUGCAAUUUAGAAUAUGUUUUUCCUAAUUUGAAUAAGAAAUAGAUAAACAUGAAUAAGUAUAUAUAUAUUUCCUAUUUAGAAUAUUUAUUUAUUCAAAUUAGGUGAAACAUAAUCUAGGUUGUAUAUAUAUAUGUUAUACCAAUGCGAUUGAGAGCAACAAGACAUAAUAAAGAGUUUUCGAAAACUUUUUUCUAGUUUCUACAUAAGAGGAG
Short sequences
sequencetypearmstartend
AGACCAACAGCTACGTATTAGAGGATTT
primer5p229
GTTTTCCCCCAAACTCTTCTCTAGTT
primer3p97122
UUAUGUCUUGUUGAUCUCAAU
sRNA5p129149
UUGAGAGCAACAAGACAUAAU
sRNA3p320340

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR863 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 384 nt
MFE = -152.60 kcal/mol

COMMENTS