miR837
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed1.4385201.670150
10day-seedling2.017840.2858843.825990.173497
14day-seedling1.3445303.344680
25day-aerial0.093821.116071.80061.0706
35day-aerial0.679650.2199212.450140.214086
42day-rosette0.691350.7145022.54310.85823
42day-stem1.095250.5266232.875140.369605
53day-rosette1.171090.5844623.01360.478631
53day-stem1.993541.229073.161430.490632
53day-inflores1.473150.9358442.623890.4355
53day-silique3.1116504.300860
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed1----N/D--N/D
2----N/D--N/D
31.00042.7518.472.74e-6-5.5617.714.68e-6-5.33
10day-seedling11.00029.2516.391.17e-5-4.9310.95.25e-4-3.28
21.00028.9415.691.89e-5-4.729.881.06e-3-2.97
31.00028.9417.575.14e-6-5.2910.865.39e-4-3.27
14day-seedling11.00032.3618.792.21e-6-5.6612.142.21e-4-3.66
2----N/D--N/D
3----N/D--N/D
25day-aerial19.99938.425.552.04e-8-7.6919.791.11e-6-5.96
2----N/D--N/D
30.99934.220.327.64e-7-6.1214.763.61e-5-4.44
35day-aerial10.99934.9920.536.59e-7-6.18153.06e-5-4.51
21.00033.3120.596.36e-7-6.214.454.46e-5-4.35
30.99935.0221.832.69e-7-6.5715.641.96e-5-4.71
42day-rosette10.99933.1519.611.25e-6-5.912.51.72e-4-3.76
20.99638.0723.697.41e-8-7.1317.993.83e-6-5.42
31.00033.0119.491.36e-6-5.8713.926.46e-5-4.19
42day-stem10.99929.2917.65.49e-1-5.312.292.32e-1-3.7
21.00032.54209.55e-1-6.214.454.47e-1-4.35
30.99834.042.666.37e-7-6.2214.354.78e-1-4.33
53day-rosette11.00031.6517.65.04e-6-5.311.613.20e-4-3.5
21.00031.3319.051.85e-6-5.7313.339.70e-5-4.01
31.00034.3321.443.51e-7-6.4614.793.54e-5-4.45
53day-stem10.99934.4421.024.70e-7-6.3314.54.31e-5-4.37
21.00030.715.931.60e-5-4.7911.284.03e-4-3.39
31.00030.5512.941.27e-4-3.99.999.83e-4-3.01
53day-inflores10.99934.1720.785.55e-7-6.2615.631.98e-5-4.7
21.00034.0719.441.40e-6-5.8514.893.30e-5-4.48
30.99428.6814.853.38e-5-4.4710.268.13e-4-3.09
53day-silique11.00032.7612.921.29e-4-3.898.972.00e-3-2.7
2----N/D--N/D
3----N/D--N/D
NGS expression data
Expression of miR837 transcript in NGS data
Sequences
miRNA transcript
AAGUCAUGCCCUUCAUCAUUGGUAUUUAUUCAUCCAUAUUCUUUCUUAUAUAUAUAUAUAUAUAUUUUUUUUUUUUGAUAAAUACUUUUGUUUGCUUACAAGUAUAAAGCCAUCAUGUUUUUUUCAUCAGUUUCUUGUUCGUUUCAAAAUUAUGAUUUUUGUUUACUUACACUCAUAAUCUUGAAACGAACAAAAAACUGAUGGAAAAACAUGAGGACUUUAUACUUGUAAAUAAAUAAAAAUAUUUAUUAGAAA
Short sequences
sequencetypearmstartend
AGTCATGCCCTTCATCATTGGTA
primer5p224
TGAAACGAACAAGAAACTGATGAAAA
primer3p121146
AUCAGUUUCUUGUUCGUUUCA
sRNA5p126146
AAACGAACAAAAAACUGAUGG
sRNA3p184204

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR837 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 255 nt
MFE = -88.90 kcal/mol

COMMENTS