miR775
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed5.721880.4413215.794390.577085
10day-seedling4.449640.3881916.2577980.243633
14day-seedling4.747420.542695.836860.397033
25day-aerial4.504240.2236116.2844150.222911
35day-aerial4.438650.1801236.2558080.0562726
42day-rosette3.944160.6456246.4356690.972107
42day-stem4.9730.1326786.4727260.254838
53day-rosette4.508210.3921876.3507120.393908
53day-stem5.068450.4278146.6137150.654306
53day-inflores5.321690.4797296.8914710.950293
53day-silique5.323120.07752736.4657110.0373008
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00028.024.175.57e-2-1.254.085.92e-2-1.23
21.00033.735.751.86e-2-1.735.881.69e-2-1.77
31.00027.092.821.41e-1-0.852.052.41e-1-0.62
10day-seedling11.00019.897.037.63e-3-2.121.543.44e-1-0.46
21.00022.18.862.16e-3-2.673.041.21e-1-0.92
31.00020.99.531.36e-3-2.872.811.42e-1-0.85
14day-seedling11.00022.548.971.99e-3-2.72.331.99e-1-0.7
20.99625.957.834.38e-3-2.364.933.28e-2-1.48
31.00023.325.532.16e-2-1.663.399.53e-2-1.02
25day-aerial11.00021.838.971.99e-3-2.73.211.08e-1-0.97
21.00022.098.043.79e-3-2.421.82.87e-1-0.54
30.99921.567.684.86e-3-2.312.122.30e-1-0.64
35day-aerial10.99922.287.824.43e-3-2.352.282.05e-1-0.69
20.99921.518.792.26e-3-2.652.661.59e-1-0.8
30.99321.868.662.47e-3-2.612.481.80e-1-0.75
42day-rosette10.99620.476.938.18e-3-2.09-0.171.13e+00.05
21.00024.610.228.37e-4-3.084.534.33e-2-1.36
30.99921.98.383.00e-3-2.522.811.42e-1-0.85
42day-stem10.99818.066.371.26e-1-1.921.634.79e-1-0.33
21.00019.547.957.87e-1-2.171.453.66e-1-0.44
31.00019.966.581.47e-1-1.990.288.29e-1-0.81
53day-rosette11.00020.836.789.12e-3-2.040.795.79e-1-0.24
21.00021.49.111.81e-3-2.743.399.51e-2-1.02
31.00021.848.952.03e-3-2.692.292.05e-1-0.69
53day-stem10.98118.785.352.44e-2-1.61-1.162.24e+00.35
20.99721.556.789.12e-3-2.042.122.29e-1-0.64
30.99623.475.861.72e-2-1.772.911.33e-1-0.88
53day-inflores10.99720.87.415.87e-3-2.232.262.09e-1-0.68
20.99919.394.763.70e-2-1.430.28.70e-1-0.06
31.00018.394.564.25e-2-1.37-0.031.02e+00.01
53day-silique11.00025.715.861.72e-2-1.761.912.66e-1-0.58
21.00024.675.372.41e-2-1.621.673.14e-1-0.5
31.00024.455.472.25e-2-1.651.742.99e-1-0.52
NGS expression data
Expression of miR775 transcript in NGS data
Sequences
miRNA transcript
UUGGCGACUGAAUAAGAGGAUUUAAACGUUGCACUACGUGACAUUGAAACUGUCUUUCAACAUUCCAAUAUUUCAACUUUCGAAUACCCAAUAUUUGGUUUGUUCAAAGACAUUUUCGAUGUCUAGCAGUGCCAAUGUUUAAA
Short sequences
sequencetypearmstartend
UUCGAUGUCUAGCAGUGCCA
miRNA115134
TGGCGACTGAATAAGAGGATTTAAAC
primer5p227
GGCACTGCTAGACATCGAAAATGT
primer3p110133

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR775 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 143 nt
MFE = -43.43 kcal/mol

COMMENTS