miR408
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed6.074010.3135736.1465220.422004
10day-seedling4.793840.6404466.6020010.558778
14day-seedling4.814050.4993735.986860.226744
25day-aerial4.552460.2709096.3040280.263135
35day-aerial4.723370.3005236.5094650.208713
42day-rosette4.602190.2500486.4459860.418387
42day-stem4.518570.04837016.2395140.19936
53day-rosette5.129120.4218316.97162540.409634
53day-stem4.600410.1174646.1144440.287494
53day-inflores4.901930.1322936.3591590.0876346
53day-silique4.746430.2635325.889030.257879
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00026.312.451.83e-1-0.742.361.94e-1-0.71
21.00032.264.285.15e-2-1.294.414.70e-2-1.33
31.00026.772.51.77e-1-0.751.733.01e-1-0.52
10day-seedling11.00017.784.923.31e-2-1.48-0.571.49e+00.17
21.00022.28.952.03e-3-2.693.131.14e-1-0.94
31.00019.498.123.60e-3-2.441.413.77e-1-0.42
14day-seedling10.99922.729.151.77e-3-2.752.51.77e-1-0.75
20.99924.736.621.02e-2-1.993.727.61e-2-1.12
30.99923.816.021.54e-2-1.813.886.80e-2-1.17
25day-aerial10.99719.967.17.29e-3-2.141.343.95e-1-0.4
20.99922.588.532.70e-3-2.572.292.05e-1-0.69
30.99922.648.762.31e-3-2.643.21.09e-1-0.96
35day-aerial10.99520.996.541.07e-2-1.9714.99e-1-0.3
20.99821.268.532.70e-3-2.572.41.89e-1-0.72
31.00020.817.615.11e-3-2.291.433.72e-1-0.43
42day-rosette10.99921.097.555.32e-3-2.270.457.32e-1-0.14
20.99923.38.922.06e-3-2.693.231.07e-1-0.97
31.00020.937.415.88e-3-2.231.842.79e-1-0.55
42day-stem10.99820.118.422.91e-1-2.543.111.16e-1-0.94
20.99820.728.173.46e-1-2.472.621.62e-1-0.8
31.00021.58.123.67e-1-2.441.882.86e-1-0.54
53day-rosette11.00018.654.64.13e-2-1.38-1.392.62e+00.42
21.00019.2877.84e-3-2.111.284.12e-1-0.39
31.00019.947.057.53e-3-2.120.47.60e-1-0.12
53day-stem10.99921.818.392.99e-3-2.521.872.74e-1-0.56
21.00022.697.914.15e-3-2.383.261.04e-1-0.98
31.00024.266.659.95e-3-23.77.71e-2-1.11
53day-inflores11.00020.627.226.69e-3-2.172.072.38e-1-0.62
21.00021.6377.81e-3-2.112.441.84e-1-0.74
30.99920.296.461.13e-2-1.951.872.73e-1-0.56
53day-silique11.00027.457.65.15e-3-2.293.657.96e-2-1.1
21.00025.856.561.06e-2-1.972.851.38e-1-0.86
31.00027.278.33.18e-3-2.54.574.22e-2-1.37
NGS expression data
Expression of miR408 transcript in NGS data
Sequences
miRNA transcript
AAGGUUAGAUUGGUAUUGCAAUGAAAGAAGACAAAGCGGUAAUGAGAGAGAGACAGGGAACAAGCAGAGCAUGGAUUGAGUUUACUAAAACAUUAAACGACUCUGUUUUGUCUCUACCCAUGCACUGCCUCUUCCCUGGCUCCCUCUUUUUUUCUCUAUAUUUCUCUCUCUCCUUUCAUUUCACAGCUUUCAAUGGAAUUUUAUUGCUACUGCUAACG
Short sequences
sequencetypearmstartend
AUGCACUGCCUCUUCCCUGGC
miRNA120140
AAAGAAGACAAAGCGGTAATGAGAGA
primer5p2449
AAAGAGGGAGCCAGGGAAGAG
primer3p129149

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR408 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 218 nt
MFE = -65.10 kcal/mol

COMMENTS