miR399d
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed3.237031.167713.332710.975453
10day-seedling3.751581.22245.559741.08109
14day-seedling2.433880.8181573.871430.0216992
25day-aerial0.206250.537621.968790.578045
35day-aerial0.1028302.052760
42day-rosette0.551741.092612.599460.540476
42day-stem0.205950.7392131.925860.731676
53day-rosette0.146730.3107841.908510.252673
53day-stem1.318110.9973182.734810.761112
53day-inflores0.900370.56262.249740.435471
53day-silique2.656831.078523.799431.11854
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed1----N/D--N/D
21.00037.749.761.16e-3-2.949.891.05e-3-2.98
31.00039.5215.242.58e-5-4.5914.474.40e-5-4.36
10day-seedling11.00018.996.131.43e-2-1.850.646.43e-1-0.19
21.00025.9112.671.54e-4-3.816.858.65e-3-2.06
31.00024.9413.588.19e-5-4.096.868.59e-3-2.07
14day-seedling11.00030.6617.097.18e-6-5.1410.447.18e-4-3.14
20.97131.3613.251.03e-4-3.9910.347.71e-4-3.11
3----N/D--N/D
25day-aerial11.00037.4824.633.86e-8-7.4118.872.09e-6-5.68
21.00035.4721.423.56e-7-6.4515.182.69e-5-4.57
30.99935.5421.663.03e-7-6.5216.091.43e-5-4.84
35day-aerial1----N/D--N/D
2----N/D--N/D
30.99735.8122.621.55e-7-6.8116.431.13e-5-4.95
42day-rosette10.99837.0123.488.57e-8-7.0716.371.18e-5-4.93
21.00032.8618.472.75e-6-5.5612.781.42e-4-3.85
30.99933.7920.277.92e-7-6.114.73.76e-5-4.43
42day-stem11.00035.9924.34.84e-8-7.3118.991.92e-6-5.72
20.99732.319.761.13e-1-5.9514.35.28e-1-4.28
31.00037.0323.657.60e-8-7.1217.346.14e-6-5.23
53day-rosette11.00037.5523.58.45e-8-7.0717.515.37e-6-5.27
21.00034.3222.042.33e-7-6.6316.321.22e-5-4.91
3----N/D--N/D
53day-stem10.99933.1319.711.17e-6-5.9313.191.07e-4-3.97
20.99736.4721.692.95e-7-6.5317.047.43e-6-5.13
31.00032.8315.222.61e-5-4.5812.272.02e-4-3.69
53day-inflores10.99933.9520.556.49e-7-6.1915.42.31e-5-4.64
20.99932.617.973.89e-6-5.4113.429.16e-5-4.04
30.99735.821.972.44e-7-6.6117.385.87e-6-5.23
53day-silique11.00030.2910.447.18e-4-3.146.491.11e-2-1.95
21.00036.6817.395.84e-6-5.2313.687.61e-5-4.12
31.00034.4215.452.23e-5-4.6511.722.96e-4-3.53
NGS expression data
Expression of miR399d transcript in NGS data
Sequences
miRNA transcript
GGUUGGAUUACUGGGCGAAUACUCCUAUGGCAGAUCGCAUUGGCUAGAUAUGCAAGUAAAAUGCUUCUCUGCCAAAGGAGAUUUGCCCCGCAAUUCAUCC
Short sequences
sequencetypearmstartend
UGCCAAAGGAGAUUUGCCCCG
miRNA7090
AATACTCCTATGGCAGATCGCATTGG
primer5p1843
TCCTTTGGCAGAGAAGCATTTTACTTG
primer3p5379

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR399d found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 100 nt
MFE = -45.40 kcal/mol

COMMENTS