miR319b
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed2.980220.5195343.07590.327276
10day-seedling3.401690.6819225.209850.566387
14day-seedling3.295380.2522044.464330.486749
25day-aerial3.063710.628324.833450.661049
35day-aerial3.745720.08451725.537550.0283154
42day-rosette4.172270.6479655.975160.82082
42day-stem4.960420.1567256.6717810.0627839
53day-rosette2.625560.680614.468060.575296
53day-stem5.237280.167376.739350.505145
53day-inflores4.738310.1412056.1438530.135762
53day-silique3.713420.3588324.856020.39938
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed1----N/D--N/D
21.00040.1112.132.23e-4-3.6512.272.03e-4-3.69
31.00038.8514.574.10e-5-4.3913.86.99e-5-4.16
10day-seedling11.00022.29.341.55e-3-2.813.846.97e-2-1.16
21.00026.5313.281.00e-4-47.475.64e-3-2.25
31.00024.6113.241.03e-4-3.996.531.09e-2-1.96
14day-seedling11.00026.7713.21.06e-4-3.976.561.06e-2-1.97
20.99130.2812.172.16e-4-3.669.271.62e-3-2.79
31.00029.3311.543.35e-4-3.479.41.48e-3-2.83
25day-aerial11.00028.2615.42.31e-5-4.649.641.25e-3-2.9
20.99926.3512.311.97e-4-3.716.071.49e-2-1.83
30.99825.2411.363.81e-4-3.425.81.80e-2-1.74
35day-aerial10.99924.9510.496.93e-4-3.164.963.22e-2-1.49
20.99623.6310.95.22e-4-3.284.773.66e-2-1.44
30.99924.2311.034.77e-4-3.324.843.48e-2-1.46
42day-rosette11.00020.657.117.24e-3-2.14--N/D
21.00025.7711.383.74e-4-3.435.691.93e-2-1.71
30.99923.219.691.21e-3-2.924.125.75e-2-1.24
42day-stem11.00018.026.331.24e-1-1.971.234.92e-1-0.39
20.99718.976.421.17e-1-1.930.875.46e-1-0.26
30.99920.77.316.28e-1-2.221.774.97e-1-0.33
53day-rosette11.00029.7115.661.93e-5-4.729.671.22e-3-2.91
21.00024.2211.932.57e-4-3.596.211.35e-2-1.87
31.00028.89161.52e-5-4.829.351.54e-3-2.81
53day-stem11.00019.856.421.16e-2-1.93-0.091.07e+00.03
21.00020.65.831.76e-2-1.751.184.43e-1-0.35
30.99922.925.312.51e-2-1.62.361.95e-1-0.71
53day-inflores10.99621.337.944.07e-3-2.392.791.45e-1-0.84
21.00022.217.585.23e-3-2.283.021.23e-1-0.91
30.99520.847.017.73e-3-2.112.421.86e-1-0.73
53day-silique11.00029.399.541.34e-3-2.875.592.07e-2-1.68
21.00030.9611.673.07e-4-3.517.974.00e-3-2.4
31.00030.5111.543.36e-4-3.477.814.47e-3-2.35

Nothern hybridization
NGS expression data
Expression of miR319b transcript in NGS data
Sequences
miRNA transcript
AGAGAGCUUUCUUCGGUCCACUCAUGGAGUAAUAUGUGAGAUUUAAUUGACUCUCGACUCAUUCAUCCAAAUACCAAAUGAAAGAAUUUGUUCUCAUAUGGUAAAUGAAUGAAUGAUGCGAGAGACAAAUUGAGUCUUCACUUCUCUAUGCUUGGACUGAAGGGAGCUCCCU
Short sequences
sequencetypearmstartend
UUGGACUGAAGGGAGCUCCCU
miRNA152172
AGAGCTTTCTTCGGTCCACTCAT
primer5p325
CAATTTGTCTCTCGCATCATTCAT
primer3p109132

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR319b found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 172 nt
MFE = -80.80 kcal/mol

COMMENTS