miR169h
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed3.539440.5399843.611960.566386
10day-seedling0.47450.6306262.282660.734615
14day-seedling-0.6275601.373530
25day-aerialN/D-N/D-
35day-aerial1.4157603.265730
42day-rosette1.6301403.306110
42day-stem0.248250.5474191.882710.496572
53day-rosette3.782875.089555.625375.04947
53day-stem1.94530.9039933.371130.145145
53day-inflores0.496191.618732.164641.21338
53day-silique3.182030.1977794.324630.237502
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00033.49.551.34e-3-2.879.461.42e-3-2.85
21.00041.0613.081.16e-4-3.9413.211.05e-4-3.98
31.00036.1311.862.69e-4-3.5711.094.58e-4-3.34
10day-seedling11.00033.7420.885.18e-7-6.2915.392.33e-5-4.63
21.00037.324.055.74e-8-7.2418.243.23e-6-5.49
31.00031.4720.18.91e-7-6.0513.389.35e-5-4.03
14day-seedling10.00038.8325.262.50e-8-7.618.612.50e-6-5.6
2----N/D--N/D
3----N/D--N/D
25day-aerial1----N/D--N/D
2----N/D--N/D
3----N/D--N/D
35day-aerial1----N/D--N/D
21.00031.2618.542.63e-6-5.5812.41.84e-4-3.73
3----N/D--N/D
42day-rosette1----N/D--N/D
2----N/D--N/D
30.99931.3617.844.27e-6-5.3712.272.02e-4-3.69
42day-stem10.99832.8321.144.32e-7-6.3615.831.71e-1-4.77
20.99636.2623.717.26e-1-7.1418.173.48e-1-5.47
3----N/D--N/D
53day-rosette11.0005.24-8.814.48e+22.65-14.82.84e+44.45
21.00031.819.511.34e-6-5.8713.797.04e-5-4.15
31.00034.2521.363.72e-7-6.4314.73.76e-5-4.43
53day-stem10.99732.3418.912.02e-6-5.6912.41.86e-4-3.73
2----N/D--N/D
30.99832.2714.673.84e-5-4.4211.712.98e-4-3.53
53day-inflores1----N/D--N/D
20.99538.123.478.61e-8-7.0618.912.03e-6-5.69
30.99831.6317.84.37e-6-5.3613.211.05e-4-3.98
53day-silique11.00031.7811.932.56e-4-3.597.983.96e-3-2.4
21.00032.2712.981.24e-4-3.919.271.62e-3-2.79
31.00032.1113.141.11e-4-3.969.411.47e-3-2.83
NGS expression data
Expression of miR169h transcript in NGS data
Sequences
miRNA transcript
AUUGUGUCCACUCCAUCUUCGUACGGUCAUGCCUAUAUAACACACAUAGUAGUCUUGUGGGAUACUCAUCAACAACCUCUUCAUAAAUACAUAAAUCAUAUAAGAGAAAAUGGUGACAUGAAGAAUGAGAACUUGUGUGGUAGCCAAGGAUGACUUGCCUGCGUUUUAGACCAUAUAUAUCAAAGACUCACUCGAUCGAUAGUCUUAGAGUUGGUUGGUCGUCAGGCAGUCUCCUUGGCUAUUCAAACAAUUCUCAUUCUCUUCAUUCACAUUUCUCUUUUUUGG
Short sequences
sequencetypearmstartend
UAGCCAAGGAUGACUUGCCUG
miRNA141161
TTGTGTCCACTCCATCTTCG
primer5p221
CCTGACGACCAACCAACTCT
primer3p207226

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR169h found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 285 nt
MFE = -92.50 kcal/mol

COMMENTS