miR162a
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed3.899421.293733.971931.42882
10day-seedling4.39530.2253946.2034520.21344
14day-seedling4.857220.5606656.0303690.432567
25day-aerial4.667620.2164936.4305950.114897
35day-aerial4.911480.3028736.6997840.136232
42day-rosette5.147170.3061847.02906770.435778
42day-stem4.812160.5811866.7752580.0387718
53day-rosette5.490760.2042297.3332610.131261
53day-stem5.265980.269216.4528570.240712
53day-inflores5.299480.1514366.7442740.103992
53day-silique4.947520.1148176.0901180.0768881
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00033.9710.129.01e-4-3.0510.039.57e-4-3.02
21.00042.6614.693.79e-5-4.4214.823.46e-5-4.46
31.00030.376.11.46e-2-1.845.332.49e-2-1.6
10day-seedling11.00020.687.824.42e-3-2.352.331.99e-1-0.7
21.00022.529.271.62e-3-2.793.469.10e-2-1.04
31.00020.238.872.14e-3-2.672.152.25e-1-0.65
14day-seedling10.99622.188.612.57e-3-2.591.962.57e-1-0.59
20.99725.817.74.82e-3-2.324.793.61e-2-1.44
31.00022.825.033.05e-2-1.522.91.34e-1-0.87
25day-aerial10.99920.577.714.78e-3-2.321.952.59e-1-0.59
20.99422.538.482.79e-3-2.552.242.11e-1-0.67
31.00020.937.057.56e-3-2.121.483.57e-1-0.45
35day-aerial10.99520.335.871.71e-2-1.770.337.93e-1-0.1
21.00019.797.077.43e-3-2.130.945.22e-1-0.28
30.99320.867.664.93e-3-2.311.483.60e-1-0.44
42day-rosette11.00019.776.231.33e-2-1.88-0.871.83e+00.26
21.00019.384.993.14e-2-1.5-0.71.62e+00.21
31.00020.657.137.14e-3-2.151.563.39e-1-0.47
42day-stem11.00017.746.491.52e-1-1.830.745.99e-1-0.22
20.99918.786.231.33e-1-1.880.696.22e-1-0.26
31.00020.316.938.27e-1-2.860.626.50e-1-0.19
53day-rosette11.00018.434.384.79e-2-1.32-1.63.04e+00.48
21.00017.214.923.29e-2-1.48-0.791.73e+00.24
31.00018.625.731.88e-2-1.73-0.921.90e+00.28
53day-stem10.99719.966.531.08e-2-1.97--N/D
20.99919.564.783.64e-2-1.440.139.15e-1-0.04
30.99923.285.681.95e-2-1.712.731.51e-1-0.82
53day-inflores10.99919.385.991.57e-2-1.80.845.60e-1-0.25
20.99920.395.761.85e-2-1.731.24.35e-1-0.36
30.99418.935.12.91e-2-1.540.517.02e-1-0.15
53day-silique11.00027.077.226.69e-3-2.173.271.03e-1-0.99
21.00025.766.471.13e-2-1.952.761.47e-1-0.83
31.00025.736.769.21e-3-2.043.031.22e-1-0.91
NGS expression data
Expression of miR162a transcript in NGS data
Sequences
miRNA transcript
UAGUUGGAAGAAGAGUGAGAGUCGCUGGAGGCAGCGGUUCAUCGAUCUCUUCCUGUGAACACAUUAAAAAUGUAAAAGCAUGAAUAGAUCGAUAAACCUCUGCAUCCAGCGUUUGCCUCUUGUAUCUUUCUUAUUGACUUGAAUCUUUUUGUUUAUUGGUUUUUGAAAGAAGAAAAAAGUGAGGGAAAACAGAGUCAAGUCCGAUUACUUUUCUGGGAAAGCUGAGGAUUUU
Short sequences
sequencetypearmstartend
UCGAUAAACCUCUGCAUCCAG
miRNA89109
AGAAGAGTGAGAGTCGCTGGA
primer5p929
AAATCCTCAGCTTTCCCAGA
primer3p212231

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR162a found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 232 nt
MFE = -79.20 kcal/mol

COMMENTS