miR861
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed5.485740.03247175.558250.161088
10day-seedling3.328640.2517885.136790.160538
14day-seedling3.577830.4390274.749530.379516
25day-aerial3.380760.2543194.993150.380124
35day-aerial3.343920.2062595.135750.100163
42day-rosette3.370470.2216235.22380.182885
42day-stem3.386880.04954985.109370.140245
53day-rosette3.789040.4408025.631550.392156
53day-stem3.712480.5651735.210860.14386
53day-inflores3.77070.08763315.2050.023258
53day-silique4.309140.1135655.451740.11561
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00028.84.953.24e-2-1.494.863.44e-2-1.46
21.00033.135.152.81e-2-1.555.292.56e-2-1.59
31.00029.264.993.14e-2-1.54.225.36e-2-1.27
10day-seedling11.00024.9712.112.26e-4-3.656.621.02e-2-1.99
21.00024.6511.413.69e-4-3.435.592.07e-2-1.68
31.00024.4413.071.16e-4-3.936.361.22e-2-1.91
14day-seedling10.99926.3312.751.45e-4-3.846.111.45e-2-1.84
20.00029.6111.53.45e-4-3.468.62.58e-3-2.59
30.99827.649.851.09e-3-2.967.714.78e-3-2.32
25day-aerial10.99924.8111.952.53e-4-3.66.191.37e-2-1.86
20.99526.9512.91.31e-4-3.886.669.90e-3-2
30.99825.111.224.20e-4-3.385.651.99e-2-1.7
35day-aerial11.00025.8111.363.81e-4-3.425.821.77e-2-1.75
21.00025.3112.591.62e-4-3.796.461.14e-2-1.94
30.00025.6812.491.74e-4-3.766.31.27e-2-1.9
42day-rosette11.00026.1712.631.57e-4-3.85.532.17e-2-1.66
21.00025.6411.264.07e-4-3.395.572.10e-2-1.68
31.00025.6912.172.17e-4-3.666.61.03e-2-1.99
42day-stem11.00023.5111.822.77e-1-3.566.591.99e-1-1.96
21.00024.6812.142.22e-1-3.656.591.39e-1-1.98
31.00025.4312.522.36e-1-3.635.741.87e-1-1.73
53day-rosette11.00023.089.031.91e-3-2.723.051.21e-1-0.92
21.00023.3911.14.55e-4-3.345.392.39e-2-1.62
31.00024.7611.862.68e-4-3.575.212.71e-2-1.57
53day-stem10.99926.2512.831.38e-4-3.866.311.26e-2-1.9
21.00024.8310.069.40e-4-3.035.42.36e-2-1.63
30.99926.689.071.86e-3-2.736.121.44e-2-1.84
53day-inflores10.99924.4511.064.68e-4-3.335.911.67e-2-1.78
20.99925.2310.66.43e-4-3.196.051.51e-2-1.82
30.99924.3510.526.81e-4-3.175.931.64e-2-1.79
53day-silique11.00028.88.952.02e-3-2.6953.13e-2-1.51
21.00027.858.562.66e-3-2.584.853.46e-2-1.46
31.00028.289.311.58e-3-2.85.582.09e-2-1.68
NGS expression data
Expression of miR861 transcript in NGS data
Sequences
miRNA transcript
GGGGCUUUGGUGAAGGAUUAAGGCUGAUUUAUGGAGUGUAUAAAUUGGUAAAAUCUUCAUUACCAUGUAUCAUUGUUUUCGAACGAUGUCCUUGGAGAAAUAUGCGUCAAUGGAGUCCGUCUUCUUGAGAAGCAUUUUUGAGUGAGAAUGAUUCUCAUGAUGGAUAUGUCUUCAAGGACUUCUUUCAAACAAUGGUAC
Short sequences
sequencetypearmstartend
GGGCTTTGGTGAAGGATTAAGG
primer5p223
GACGGACTCCATTGACGCATAT
primer3p100121
CCUUGGAGAAAUAUGCGUCAA
sRNA5p90110
GAUGGAUAUGUCUUCAAGGAC
sRNA3p159179

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR861 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 198 nt
MFE = -74.20 kcal/mol

COMMENTS