miR860
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed6.665320.4357276.7378320.560851
10day-seedling5.392880.4674397.2010350.36764
14day-seedling4.616430.4109386.0739271.5553
25day-aerial4.677410.1772266.4399640.122879
35day-aerial5.159460.233856.97338920.921558
42day-rosette5.391840.3342517.2344890.429203
42day-stem5.617270.1955177.3416140.1923
53day-rosette6.1839240.2215958.026430.0891211
53day-stem5.50380.6074777.1980230.431397
53day-inflores5.700320.343777.02844830.526339
53day-silique6.1220010.1517317.2645950.119551
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00024.520.666.33e-1-0.20.576.72e-1-0.17
21.00030.712.731.51e-1-0.822.871.37e-1-0.86
31.00024.22-0.061.04e+00.02-0.831.77e+00.25
10day-seedling11.00016.413.558.55e-2-1.07-1.953.85e+00.59
21.00019.556.31.27e-2-1.90.497.14e-1-0.15
31.00017.546.171.39e-2-1.86-0.541.46e+00.16
14day-seedling11.00019.936.361.22e-2-1.91-0.291.22e+00.09
20.97926.588.472.81e-3-2.555.572.11e-2-1.68
30.99526.458.662.47e-3-2.616.521.09e-2-1.96
25day-aerial10.99820.98.053.79e-3-2.422.292.05e-1-0.69
20.99822.118.073.73e-3-2.431.822.83e-1-0.55
31.00020.927.047.62e-3-2.121.473.60e-1-0.44
35day-aerial10.99919.685.222.68e-2-1.57-0.321.24e+00.1
20.99819.356.631.01e-2-20.57.08e-1-0.15
31.00019.676.481.12e-2-1.950.298.17e-1-0.09
42day-rosette10.99918.935.392.39e-2-1.62-1.723.29e+00.52
21.00018.594.215.41e-2-1.27-1.482.79e+00.45
30.99919.956.431.16e-2-1.940.865.51e-1-0.26
42day-stem11.00016.554.873.44e-1-1.46-0.451.37e+00.14
20.99616.43.856.92e-1-1.16-1.73.24e+00.52
31.00018.455.672.99e-1-1.53-1.252.36e+00.37
53day-rosette11.00016.782.731.51e-1-0.82-3.269.57e+00.98
21.00014.251.972.56e-1-0.59-3.751.35e+11.13
31.00016.333.449.23e-2-1.03-3.229.32e+00.97
53day-stem11.00019.56.081.48e-2-1.83-0.441.35e+00.13
21.00017.422.641.60e-1-0.79-2.014.04e+00.61
31.00021.213.618.21e-2-1.090.656.36e-1-0.2
53day-inflores10.99318.735.332.48e-2-1.610.188.83e-1-0.05
21.00018.844.215.39e-2-1.27-0.341.27e+00.1
31.00017.063.231.07e-1-0.97-1.362.57e+00.41
53day-silique11.00023.223.379.66e-2-1.02-0.581.49e+00.17
21.00021.672.381.93e-1-0.72-1.332.51e+00.4
31.00021.9731.25e-1-0.9-0.731.66e+00.22
NGS expression data
Expression of miR860 transcript in NGS data
Sequences
miRNA transcript
UCUCCCCAAAGAUGUUCCAUGCGUUCCGGAACCUAUAGAAUCUCGUUGGUUUUGUGUUAAGUCUUUUCUUGGAGAAAUGUCUUGGUUAAAUUCAAUAUAUAUAGUCCAAUCUAUUGAAGUACUAGUACACCAGCUCUAAUAAGCUGAUGUGGGUAAGUAGUUCAAUAGAUUGGACUAUGUAUAUUAAAUUUGACUAAGAGAUAAACUAGAGAAUGGGAAUAAAGAAUGAGAAACGGU
Short sequences
sequencetypearmstartend
UCAAUAGAUUGGACUAUGUAU
miRNA162182
CTCCCCAAAGATGTTCCATGC
primer5p222
CCGTTTCTCATTCTTTATTCCCATTC
primer3p211236

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR860 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 237 nt
MFE = -87.00 kcal/mol

COMMENTS