miR850
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed4.685770.1785424.814670.323813
10day-seedling5.007450.3141246.8156030.175093
14day-seedling5.909890.521087.1272790.395721
25day-aerial5.622380.1900327.5634270.19682
35day-aerial5.587030.5389427.3780530.467938
42day-rosette4.880810.8827747.1414940.786967
42day-stem4.787440.3436226.87030.725074
53day-rosette5.217980.3914327.06048850.332676
53day-stem4.908990.5895566.351870.55998
53day-inflores4.112690.2528725.57910.315998
53day-silique3.819420.1941564.962020.223011
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00031.968.113.63e-3-2.448.023.85e-3-2.41
2----N/D--N/D
31.00031.547.276.49e-3-2.196.51.11e-2-1.96
10day-seedling11.00018.325.462.27e-2-1.64-0.031.02e+00.01
21.00020.166.918.32e-3-2.081.14.68e-1-0.33
31.00018.867.495.58e-3-2.250.775.85e-1-0.23
14day-seedling10.99918.585.013.11e-2-1.51-1.643.11e+00.49
20.00021.983.876.84e-2-1.160.965.13e-1-0.29
30.99419.571.782.91e-1-0.54-0.361.28e+00.11
25day-aerial10.99816.243.389.62e-2-1.02-2.385.21e+00.72
20.99719.155.112.90e-2-1.54-1.132.20e+00.34
30.99617.343.469.06e-2-1.04-2.14.28e+00.63
35day-aerial11.00017.352.891.35e-1-0.87-2.646.25e+00.8
20.99919.26.471.12e-2-1.950.347.89e-1-0.1
30.99717.854.663.96e-2-1.4-1.532.89e+00.46
42day-rosette11.00020.446.98.39e-3-2.08-0.211.16e+00.06
20.99522.628.243.32e-3-2.482.541.71e-1-0.77
31.00017.223.77.70e-2-1.11-1.873.65e+00.56
42day-stem10.99918.476.789.12e-1-2.491.473.62e-1-0.44
20.99420.247.74.82e-1-2.322.152.26e-1-0.65
31.00019.466.751.48e-1-1.83-0.231.17e+00.7
53day-rosette11.00018.564.514.38e-2-1.36-1.482.78e+00.44
21.00018.466.171.39e-2-1.860.457.30e-1-0.14
31.00019.977.087.41e-3-2.130.427.48e-1-0.13
53day-stem11.00020.497.067.48e-3-2.130.546.86e-1-0.16
20.99323.628.842.18e-3-2.664.195.48e-2-1.26
31.00022.284.683.90e-2-1.411.723.03e-1-0.52
53day-inflores10.99322.719.321.57e-3-2.84.165.58e-2-1.25
21.00025.1210.496.97e-4-3.165.931.64e-2-1.79
31.00022.488.662.48e-3-2.614.075.97e-2-1.22
53day-silique11.00029.8710.029.63e-4-3.026.071.49e-2-1.83
21.00029.6910.47.40e-4-3.136.699.65e-3-2.02
31.00030.2511.284.03e-4-3.397.555.35e-3-2.27
NGS expression data
Expression of miR850 transcript in NGS data
Sequences
miRNA transcript
UUUUAGAUAGUGUUAUGUAUUUAUUUCUUACCUAUAGAAACCUGUCAGCUAAGAUCCGGACUACAACAAAGCACGUCUACUCUACUAUAUUCUUUUGCGAUAAUCAAUAGAUUCUUCUAACAUCGUAAAGGAAGACAAAAGAGUAUACAUACUUAGUUGUCGUCGUAUCUUUGUUGAGAAGUUUCUAAAUGGCACAUAGAAAGUACAUAAAACUAUAUGAA
Short sequences
sequencetypearmstartend
UAAGAUCCGGACUACAACAAAG
miRNA5071
CGGACTACAACAAAGCACGTCTACT
primer5p5781
TTCTCAACAAAGATACGACGACAACT
primer3p155180

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR850 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 221 nt
MFE = -66.70 kcal/mol

COMMENTS