miR833
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed2.352230.6462712.424740.513584
10day-seedling0.017020.4442791.825180.479803
14day-seedling1.051940.8279272.489260.0318315
25day-aerialN/D-N/D-
35day-aerial0.345060.2706351.929280.471786
42day-rosette0.477610.8835012.318721.1038
42day-stem0.889520.5305082.324340.37897
53day-rosette1.154080.4059072.996580.319479
53day-stem0.716290.3793622.159690.145673
53day-inflores0.611060.6156862.071010.726171
53day-silique2.3037703.427190
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00039.3715.522.13e-5-4.6715.432.26e-5-4.65
21.00041.2313.251.02e-4-3.9913.399.33e-5-4.03
31.00041.8217.555.22e-6-5.2816.788.91e-6-5.05
10day-seedling11.00037.2524.394.56e-8-7.3418.892.06e-6-5.69
21.00034.7921.553.27e-7-6.4915.731.84e-5-4.74
31.00035.0323.667.55e-8-7.1216.957.91e-6-5.1
14day-seedling11.00035.2821.72.93e-7-6.5315.062.93e-5-4.53
20.99435.9317.814.34e-6-5.3614.913.25e-5-4.49
3----N/D--N/D
25day-aerial1----N/D--N/D
2----N/D--N/D
3----N/D--N/D
35day-aerial10.99835.5421.084.50e-7-6.3515.552.09e-5-4.68
20.99835.4822.761.41e-7-6.8516.639.86e-6-5.01
31.00035.6722.481.71e-7-6.7716.291.25e-5-4.9
42day-rosette11.00032.54191.91e-6-5.7211.892.63e-4-3.58
20.99535.5721.194.18e-7-6.3815.52.16e-5-4.67
30.00038.3324.813.40e-8-7.4719.241.61e-6-5.79
42day-stem10.99731.119.411.43e-6-5.8414.125.69e-1-4.25
21.00031.719.161.71e-1-5.7713.668.19e-1-4.96
31.00035.7122.331.90e-7-6.7216.221.54e-1-4.82
53day-rosette11.00032.1418.093.58e-6-5.4512.12.27e-4-3.64
21.00031.6619.381.47e-6-5.8313.667.72e-5-4.11
31.00033.6820.795.52e-7-6.2614.135.57e-5-4.25
53day-stem10.99935.4622.042.32e-7-6.6315.522.13e-5-4.67
20.99635.821.034.67e-7-6.3316.381.18e-5-4.93
31.00036.919.291.56e-6-5.8116.341.21e-5-4.92
53day-inflores10.99833.1719.781.11e-6-5.9514.623.97e-5-4.4
2----N/D--N/D
30.99736.522.671.50e-7-6.8218.083.61e-6-5.44
53day-silique1----N/D--N/D
2----N/D--N/D
31.00034.5715.62.01e-5-4.711.872.67e-4-3.57
NGS expression data
Expression of miR833 transcript in NGS data
Sequences
miRNA transcript
UUUGGACGUAGAUGGUACUCUUACAGAUGGUGAUCGUGAAAACAAACGGAGGAGUUUGUUUGUUGUACUCGGUCUAGUUCAAACCAAAACAUCUUUGCAAAUAUGUAUGGUUUGAGCUAGACCGAUGUCAACAAACAAGCUGCUUCG
Short sequences
sequencetypearmstartend
TTGGACGTAGATGGTACTCTTACAGATG
primer5p229
CATCGGTCTAGCTCAAACCATACATA
primer3p102127
UGUUUGUUGUACUCGGUCUAGU
sRNA5p5778
UAGACCGAUGUCAACAAACAAG
sRNA3p118139

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR833 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 147 nt
MFE = -60.60 kcal/mol

COMMENTS