miR831
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed2.786610.278092.859120.394487
10day-seedling0.458170.3316472.266320.181621
14day-seedling0.7025202.702740
25day-aerialN/D-N/D-
35day-aerial-0.306240.4762631.432380.332324
42day-rosette-0.362590.7272871.726660.195701
42day-stem-0.057010.4304151.738590.319139
53day-rosette0.301070.5016872.143570.367631
53day-stem0.149431.44371.971810.136515
53day-inflores1.023550.3790252.458490.480022
53day-silique2.262520.3029633.405110.281267
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00037.3913.538.46e-5-4.0713.448.98e-5-4.05
21.00043.0415.062.93e-5-4.5315.192.67e-5-4.57
31.00037.6713.49.25e-5-4.0312.631.58e-4-3.8
10day-seedling11.00033.3920.536.61e-7-6.1815.042.98e-5-4.53
21.00035.2221.972.43e-7-6.6116.161.37e-5-4.86
31.00034.0622.691.47e-7-6.8315.981.55e-5-4.81
14day-seedling10.99934.4920.925.04e-7-6.314.285.04e-5-4.3
2----N/D--N/D
3----N/D--N/D
25day-aerial1----N/D--N/D
2----N/D--N/D
3----N/D--N/D
35day-aerial10.99936.8822.431.78e-7-6.7516.898.24e-6-5.08
20.99437.6624.943.11e-8-7.5118.82.18e-6-5.66
30.99836.6423.458.72e-8-7.0617.266.36e-6-5.2
42day-rosette1----N/D--N/D
20.99837.1322.751.42e-7-6.8517.067.33e-6-5.13
31.00037.0723.548.17e-8-7.0917.983.88e-6-5.41
42day-stem10.99835.0323.339.46e-8-7.2418.243.75e-6-5.43
20.99834.3521.852.73e-1-6.5616.261.28e-1-4.89
31.00037.8424.474.33e-8-7.3618.153.43e-6-5.46
53day-rosette11.00036.522.451.74e-7-6.7616.461.11e-5-4.96
21.00032.7820.56.76e-7-6.1714.783.55e-5-4.45
31.00036.723.816.79e-8-7.1717.156.86e-6-5.16
53day-stem10.99836.9723.548.18e-8-7.0917.027.50e-6-5.12
2----N/D--N/D
30.00036.9419.341.51e-6-5.8216.381.17e-5-4.93
53day-inflores11.00031.7918.42.89e-6-5.5413.251.03e-4-3.99
20.99935.2120.596.36e-7-6.216.031.49e-5-4.83
30.99634.420.576.40e-7-6.1915.981.54e-5-4.81
53day-silique11.00036.1616.311.23e-5-4.9112.361.90e-4-3.72
21.00033.8714.584.10e-5-4.3910.875.34e-4-3.27
31.00035.2916.321.22e-5-4.9112.591.62e-4-3.79
NGS expression data
Expression of miR831 transcript in NGS data
Sequences
miRNA transcript
GCACAAUGCGGACAGUGCUACAAGAAGAGAUUUAUAGAGUCUUAAGAGUCUCAAGAAGCGUACAAGGAGAUGAGGAGUGAAUCACCAAAACAAGUGGUUUUGGUUUGUGAAUCACCAAAACAAGUGGUUUUGGUUUGUGAAUCAGUAUGGUUUACCCAAAACACUUGUUUGGUGUGUUUACUUCUGAUCUCUUCGUACUCUUCUUGCGAUUCUAUGACACUCUACAUGUAACAUCGGCAUGGUUUACCAAAAAGCCU
Short sequences
sequencetypearmstartend
UGAUCUCUUCGUACUCUUCUUG
miRNA185206
CAATGCGGACAGTGCTACAAGA
primer5p425
CGAAGAGATCAGAAGTAAACACACCAA
primer3p169195

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR831 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 257 nt
MFE = -99.00 kcal/mol

COMMENTS