miR830
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed5.73230.07322865.804810.165228
10day-seedling3.951840.06292745.760.138664
14day-seedling3.863050.3198765.07830.405535
25day-aerial3.30650.3781445.355310.316715
35day-aerial3.482590.2880775.52750.070241
42day-rosette3.458570.1694685.301290.414975
42day-stem3.608280.1334035.356290.0325753
53day-rosette3.745690.3287545.588190.212419
53day-stem4.125370.6614595.540640.218755
53day-inflores4.069810.05145765.504720.0683476
53day-silique4.475970.09225155.618560.132299
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00027.813.956.47e-2-1.193.866.87e-2-1.16
21.00032.414.434.64e-2-1.334.564.22e-2-1.37
31.00028.524.255.25e-2-1.283.488.94e-2-1.05
10day-seedling11.00022.759.891.05e-3-2.984.44.74e-2-1.32
21.00023.4310.188.60e-4-3.074.374.84e-2-1.32
31.00021.6710.37.93e-4-3.13.598.32e-2-1.08
14day-seedling11.00025.0311.463.54e-4-3.454.823.55e-2-1.45
20.98828.1210.019.68e-4-3.017.117.25e-3-2.14
30.99027.149.351.53e-3-2.827.216.73e-3-2.17
25day-aerial10.99723.1410.288.03e-4-3.14.524.35e-2-1.36
20.99926.8812.841.36e-4-3.876.61.03e-2-1.99
30.99924.7110.835.50e-4-3.265.272.60e-2-1.59
35day-aerial11.00024.710.258.24e-4-3.084.713.82e-2-1.42
20.99923.6710.945.07e-4-3.294.813.56e-2-1.45
30.99824.5311.343.85e-4-3.415.152.81e-2-1.55
42day-rosette10.99924.7111.174.35e-4-3.364.065.99e-2-1.22
20.99926.6712.292.00e-4-3.76.591.04e-2-1.98
31.00025.3611.842.73e-4-3.566.271.29e-2-1.89
42day-stem10.99922.351.666.19e-1-3.295.352.45e-1-1.61
21.00023.6611.124.50e-1-3.355.572.16e-1-1.68
31.00025.1511.772.87e-1-3.545.462.27e-1-1.64
53day-rosette11.00024.019.961.00e-3-33.986.36e-2-1.2
21.00022.7110.427.28e-4-3.144.713.83e-2-1.42
31.00024.9312.042.37e-4-3.635.392.39e-2-1.62
53day-stem10.99925.4612.042.38e-4-3.625.522.18e-2-1.66
21.00023.528.742.33e-3-2.634.095.87e-2-1.23
31.00025.477.874.28e-3-2.374.913.31e-2-1.48
53day-inflores10.99923.299.91.05e-3-2.984.743.74e-2-1.43
20.99924.389.751.16e-3-2.945.22.73e-2-1.56
31.00023.389.551.33e-3-2.884.963.20e-2-1.49
53day-silique11.00027.898.053.78e-3-2.424.15.85e-2-1.23
21.00027.948.642.50e-3-2.64.943.26e-2-1.49
31.00027.448.462.83e-3-2.554.733.76e-2-1.42
NGS expression data
Expression of miR830 transcript in NGS data
Sequences
miRNA transcript
CAGAGUCUCGCUAGUGUCUUUACUAAACACAAAAUCUGUAAACGCCUCGAUCUCCUCUUCUCCAAAUAGUUUAGGUUAGCUGACAUAUAAUAAUUCAAUAGACCCCAGUUUCUCCAGAUAACCUAACUAUUUUGAGAAGAAGUGAACGAAGAGCGAUUACAAGUUAGGAGAGUGCUUGAAUUUUGAAGAACAUCG
Short sequences
sequencetypearmstartend
UAACUAUUUUGAGAAGAAGUG
miRNA124144
TGTAAACGCCTCGATCTCCTCTTCT
primer5p3761
ATCGCTCTTCGTTCACTTCTTCTC
primer3p134157
UCUUCUCCAAAUAGUUUAGGUU
miRNA**5677

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR830 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 195 nt
MFE = -49.05 kcal/mol

COMMENTS