miR828
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed5.058470.3611455.130990.4877
10day-seedling3.393630.4714445.201790.281225
14day-seedling3.754460.3729374.927140.385409
25day-aerial2.970820.6299594.888190.16215
35day-aerial3.315060.1760314.993530.329067
42day-rosette3.43120.1811534.957730.819844
42day-stem3.541190.05991885.259220.187086
53day-rosette3.534490.2762695.3770.169513
53day-stem3.655290.6201445.287430.0362138
53day-inflores3.663830.4237085.31330.100347
53day-silique3.954020.2020255.096620.240911
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00029.956.091.47e-2-1.8361.56e-2-1.81
21.00035.777.794.53e-3-2.347.924.12e-3-2.38
31.00029.745.472.26e-2-1.654.73.85e-2-1.42
10day-seedling11.00023.5910.735.90e-4-3.235.232.66e-2-1.58
21.00024.7311.483.51e-4-3.455.661.97e-2-1.71
31.00025.113.747.33e-5-4.137.027.69e-3-2.11
14day-seedling10.99825.6412.062.33e-4-3.635.422.34e-2-1.63
20.99928.810.696.06e-4-3.227.784.54e-3-2.34
31.00027.389.591.30e-3-2.897.455.71e-3-2.24
25day-aerial11.00024.9412.082.31e-4-3.646.321.25e-2-1.9
20.99027.5813.548.40e-5-4.087.36.36e-3-2.2
30.99926.1612.282.02e-4-3.76.719.53e-3-2.02
35day-aerial11.00026.2611.82.80e-4-3.556.271.30e-2-1.89
21.00025.6212.91.31e-4-3.886.779.16e-3-2.04
30.99825.2112.012.42e-4-3.625.831.76e-2-1.75
42day-rosette11.00025.211.673.08e-4-3.514.564.24e-2-1.37
20.99925.7511.373.77e-4-3.425.681.95e-2-1.71
31.00026.0512.531.69e-4-3.776.968.02e-3-2.1
42day-stem10.99922.9911.333.96e-1-3.425.991.57e-1-1.84
20.99724.2611.722.96e-1-3.536.181.39e-1-1.86
31.00024.7611.373.78e-1-3.425.662.99e-1-1.53
53day-rosette11.00024.8110.765.75e-4-3.244.783.65e-2-1.44
21.00023.5211.244.15e-4-3.385.522.18e-2-1.66
31.00025.4312.541.68e-4-3.775.881.70e-2-1.77
53day-stem11.00025.6612.232.07e-4-3.685.721.90e-2-1.72
20.99924.9810.218.47e-4-3.075.552.13e-2-1.67
31.00026.348.732.35e-3-2.635.781.82e-2-1.74
53day-inflores11.00024.1810.795.66e-4-3.255.632.02e-2-1.7
21.00024.8610.238.32e-4-3.085.671.96e-2-1.71
30.98623.689.851.09e-3-2.965.262.62e-2-1.58
53day-silique11.00029.219.361.52e-3-2.825.412.35e-2-1.63
21.00029.6410.357.65e-4-3.126.659.97e-3-2
31.00029.6110.646.26e-4-3.26.918.32e-3-2.08
NGS expression data
Expression of miR828 transcript in NGS data
Sequences
miRNA transcript
GUGACAAAGUCACAAAAGUGAUAAACUCUCCUUUCCACUUUCUAAUGUUUCUUGCUUAAAUGAGUAUUCCAUGUAAAAAUGAUUCACUCACUCGUAUGGGUGGGUUGGGUUUUCUCUUCAUGAGAUGCUCAUUUGAGCAAGCAAUGUUUGGAAGUGGGACUAUUUAAUAUCAUGUAUGAGUUUUAUCUUUU
Short sequences
sequencetypearmstartend
UCUUGCUUAAAUGAGUAUUCCA
miRNA5071
CCTTTCCACTTTCTAATGTTTCTTGCT
primer5p3056
ATAGTCCCACTTCCAAACATTGCTT
primer3p139163

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR828 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 191 nt
MFE = -71.44 kcal/mol

COMMENTS