Expression
Switch to: Actin
In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).
The expression values are rescaled. Read more
Expression Data
Raw Data
Development stage | rep | R2 | Ct | actin | PP2A | ||||
---|---|---|---|---|---|---|---|---|---|
ΔCt | 2^(-ΔCt) | log10 | ΔCt | 2^(-ΔCt) | log10 | ||||
seed | 1 | 1.000 | 27.77 | 3.91 | 6.63e-2 | -1.18 | 3.83 | 7.04e-2 | -1.15 |
2 | 1.000 | 33.7 | 5.72 | 1.89e-2 | -1.72 | 5.86 | 1.72e-2 | -1.76 | |
3 | 1.000 | 26.38 | 2.11 | 2.31e-1 | -0.64 | 1.34 | 3.94e-1 | -0.4 | |
10day-seedling | 1 | 1.000 | 19.4 | 6.54 | 1.08e-2 | -1.97 | 1.04 | 4.85e-1 | -0.31 |
2 | 1.000 | 19.12 | 5.87 | 1.71e-2 | -1.77 | 0.06 | 9.60e-1 | -0.02 | |
3 | 1.000 | 19.29 | 7.92 | 4.14e-3 | -2.38 | 1.2 | 4.34e-1 | -0.36 | |
14day-seedling | 1 | 0.998 | 20.23 | 6.66 | 9.91e-3 | -2 | - | - | N/D |
2 | 0.000 | 28.34 | 10.23 | 8.32e-4 | -3.08 | 7.33 | 6.23e-3 | -2.21 | |
3 | 0.994 | 25.03 | 7.25 | 6.59e-3 | -2.18 | 5.11 | 2.90e-2 | -1.54 | |
25day-aerial | 1 | 0.998 | 20.26 | 7.4 | 5.93e-3 | -2.23 | 1.64 | 3.21e-1 | -0.49 |
2 | 0.998 | 20.7 | 6.65 | 9.93e-3 | -2 | 0.41 | 7.52e-1 | -0.12 | |
3 | 1.000 | 19.81 | 5.93 | 1.64e-2 | -1.78 | 0.37 | 7.76e-1 | -0.11 | |
35day-aerial | 1 | 0.997 | 18.86 | 4.41 | 4.71e-2 | -1.33 | -1.13 | 2.19e+0 | 0.34 |
2 | 0.994 | 20.81 | 8.09 | 3.67e-3 | -2.44 | 1.96 | 2.57e-1 | -0.59 | |
3 | 0.999 | 18.85 | 5.66 | 1.98e-2 | -1.7 | -0.53 | 1.44e+0 | 0.16 | |
42day-rosette | 1 | 0.999 | 20.38 | 6.84 | 8.71e-3 | -2.06 | -0.26 | 1.20e+0 | 0.08 |
2 | 0.995 | 21.87 | 7.49 | 5.56e-3 | -2.25 | 1.8 | 2.87e-1 | -0.54 | |
3 | 0.998 | 19.89 | 6.36 | 1.22e-2 | -1.92 | 0.79 | 5.76e-1 | -0.24 | |
42day-stem | 1 | 0.999 | 17.82 | 6.13 | 1.43e-1 | -1.85 | 0.82 | 5.66e-1 | -0.25 |
2 | 0.999 | 19.97 | 7.43 | 5.85e-1 | -2.24 | 1.88 | 2.72e-1 | -0.57 | |
3 | 1.000 | 20.42 | 7.37 | 7.62e-1 | -2.12 | 0.73 | 6.33e-1 | -0.22 | |
53day-rosette | 1 | 1.000 | 17.94 | 3.89 | 6.76e-2 | -1.17 | -2.1 | 4.29e+0 | 0.63 |
2 | 1.000 | 18.79 | 6.51 | 1.10e-2 | -1.96 | 0.79 | 5.78e-1 | -0.24 | |
3 | 1.000 | 20.25 | 7.35 | 6.11e-3 | -2.21 | 0.7 | 6.17e-1 | -0.21 | |
53day-stem | 1 | 0.999 | 21.33 | 7.91 | 4.16e-3 | -2.38 | 1.39 | 3.81e-1 | -0.42 |
2 | 1.000 | 21.01 | 6.24 | 1.33e-2 | -1.88 | 1.58 | 3.34e-1 | -0.48 | |
3 | 1.000 | 22.77 | 5.16 | 2.80e-2 | -1.55 | 2.21 | 2.17e-1 | -0.66 | |
53day-inflores | 1 | 0.999 | 21.55 | 8.16 | 3.51e-3 | -2.46 | 3 | 1.25e-1 | -0.9 |
2 | 1.000 | 22.85 | 8.22 | 3.36e-3 | -2.47 | 3.66 | 7.90e-2 | -1.1 | |
3 | 0.996 | 20.9 | 7.07 | 7.46e-3 | -2.13 | 2.48 | 1.80e-1 | -0.75 | |
53day-silique | 1 | 1.000 | 27.6 | 7.76 | 4.62e-3 | -2.33 | 3.81 | 7.15e-2 | -1.15 |
2 | 1.000 | 27.15 | 7.86 | 4.30e-3 | -2.37 | 4.16 | 5.60e-2 | -1.25 | |
3 | 1.000 | 26.78 | 7.81 | 4.46e-3 | -2.35 | 4.08 | 5.93e-2 | -1.23 |
NGS expression data
Expression of miR825 transcript in NGS dataSequences
miRNA transcript
CUGACCAUGUUUGUUUCUUUAAUUUGCUUGUUCUUUCUAUAAUUACUUUUUGUAUAGAAUUCACUAGUUGAUUCCAUCGACUCGUUCAAGCACCAGCUCGAAGAAGCUUAGCUAAUUUAUCUUAGAAAAUAAUGAAAAAGCUAUGCUUCUCAAGAAGGUGCAUGAACAAGUUGAUGUAUAUUUUGAUGUGUAAAGACCAAAAUUGGAUCUCACAUGUG
Short sequences
sequence | type | arm | start | end |
---|---|---|---|---|
UUCUCAAGAAGGUGCAUGAAC | miRNA | 147 | 167 | |
TGACCATGTTTGTTTCTTTAATTTGCT | primer | 5p | 2 | 28 |
TCAACTTGTTCATGCACCTTCTTG | primer | 3p | 151 | 174 |
For experimental procedure see:Materials and Methods
Cross-references
miRBase | miRBase record |
ASRP | ASRP record |
PMRD | PMRD record |
TAIR | TAIR record |
PubMed Entrez | The most up-to-date article(s) about miR825 found in PubMed |