miR825
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed5.82090.5437475.893420.680836
10day-seedling4.960560.3139656.7687150.186654
14day-seedling4.190710.8680025.60580.941334
25day-aerial4.86270.3171556.7572290.21718
35day-aerial5.164280.5597256.96940460.492582
42day-rosette4.743740.341777.002919590.697685
42day-stem4.933230.2005536.6559570.192533
53day-rosette5.2190.5440717.06150280.494803
53day-stem5.062640.4171876.4801930.128389
53day-inflores4.647910.1949736.064640.189175
53day-silique4.649230.01599845.791820.0554607
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00027.773.916.63e-2-1.183.837.04e-2-1.15
21.00033.75.721.89e-2-1.725.861.72e-2-1.76
31.00026.382.112.31e-1-0.641.343.94e-1-0.4
10day-seedling11.00019.46.541.08e-2-1.971.044.85e-1-0.31
21.00019.125.871.71e-2-1.770.069.60e-1-0.02
31.00019.297.924.14e-3-2.381.24.34e-1-0.36
14day-seedling10.99820.236.669.91e-3-2--N/D
20.00028.3410.238.32e-4-3.087.336.23e-3-2.21
30.99425.037.256.59e-3-2.185.112.90e-2-1.54
25day-aerial10.99820.267.45.93e-3-2.231.643.21e-1-0.49
20.99820.76.659.93e-3-20.417.52e-1-0.12
31.00019.815.931.64e-2-1.780.377.76e-1-0.11
35day-aerial10.99718.864.414.71e-2-1.33-1.132.19e+00.34
20.99420.818.093.67e-3-2.441.962.57e-1-0.59
30.99918.855.661.98e-2-1.7-0.531.44e+00.16
42day-rosette10.99920.386.848.71e-3-2.06-0.261.20e+00.08
20.99521.877.495.56e-3-2.251.82.87e-1-0.54
30.99819.896.361.22e-2-1.920.795.76e-1-0.24
42day-stem10.99917.826.131.43e-1-1.850.825.66e-1-0.25
20.99919.977.435.85e-1-2.241.882.72e-1-0.57
31.00020.427.377.62e-1-2.120.736.33e-1-0.22
53day-rosette11.00017.943.896.76e-2-1.17-2.14.29e+00.63
21.00018.796.511.10e-2-1.960.795.78e-1-0.24
31.00020.257.356.11e-3-2.210.76.17e-1-0.21
53day-stem10.99921.337.914.16e-3-2.381.393.81e-1-0.42
21.00021.016.241.33e-2-1.881.583.34e-1-0.48
31.00022.775.162.80e-2-1.552.212.17e-1-0.66
53day-inflores10.99921.558.163.51e-3-2.4631.25e-1-0.9
21.00022.858.223.36e-3-2.473.667.90e-2-1.1
30.99620.97.077.46e-3-2.132.481.80e-1-0.75
53day-silique11.00027.67.764.62e-3-2.333.817.15e-2-1.15
21.00027.157.864.30e-3-2.374.165.60e-2-1.25
31.00026.787.814.46e-3-2.354.085.93e-2-1.23
NGS expression data
Expression of miR825 transcript in NGS data
Sequences
miRNA transcript
CUGACCAUGUUUGUUUCUUUAAUUUGCUUGUUCUUUCUAUAAUUACUUUUUGUAUAGAAUUCACUAGUUGAUUCCAUCGACUCGUUCAAGCACCAGCUCGAAGAAGCUUAGCUAAUUUAUCUUAGAAAAUAAUGAAAAAGCUAUGCUUCUCAAGAAGGUGCAUGAACAAGUUGAUGUAUAUUUUGAUGUGUAAAGACCAAAAUUGGAUCUCACAUGUG
Short sequences
sequencetypearmstartend
UUCUCAAGAAGGUGCAUGAAC
miRNA147167
TGACCATGTTTGTTTCTTTAATTTGCT
primer5p228
TCAACTTGTTCATGCACCTTCTTG
primer3p151174

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR825 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 218 nt
MFE = -58.20 kcal/mol

COMMENTS