miR823
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed4.299731.275624.372251.36362
10day-seedling3.104990.322444.913150.214863
14day-seedling3.573730.4208894.746740.385003
25day-aerial3.251160.1541055.03170.15944
35day-aerial3.131190.3128674.874920.228043
42day-rosette3.143090.2712034.713750.335743
42day-stem3.360840.2240535.083340.335994
53day-rosette3.625980.4679775.468480.42919
53day-stem3.575060.2992985.019130.215911
53day-inflores3.391050.2608745.004950.323331
53day-silique4.120390.2886895.262990.328876
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00029.845.981.58e-2-1.85.91.68e-2-1.77
21.00041.813.826.92e-5-4.1613.956.30e-5-4.2
31.00031.387.117.25e-3-2.146.341.24e-2-1.91
10day-seedling11.00024.5711.712.99e-4-3.526.211.35e-2-1.87
21.00026.713.458.91e-5-4.057.645.01e-3-2.3
31.00025.0213.667.75e-5-4.116.948.13e-3-2.09
14day-seedling11.00026.312.721.48e-4-3.836.081.48e-2-1.83
20.99929.5911.483.50e-4-3.468.582.62e-3-2.58
30.99927.739.941.02e-3-2.997.84.50e-3-2.35
25day-aerial11.00024.7211.862.68e-4-3.576.11.45e-2-1.84
20.99226.6712.631.58e-4-3.86.381.20e-2-1.92
30.99926.5712.691.51e-4-3.827.137.15e-3-2.15
35day-aerial11.00026.2511.792.82e-4-3.556.261.31e-2-1.88
21.00026.613.886.65e-5-4.187.744.67e-3-2.33
30.99926.0812.881.32e-4-3.886.699.65e-3-2.02
42day-rosette11.00027.3813.846.80e-5-4.176.749.37e-3-2.03
21.00026.5612.172.16e-4-3.676.481.12e-2-1.95
30.99925.9412.421.83e-4-3.746.858.66e-3-2.06
42day-stem10.99623.5711.882.65e-1-3.586.571.50e-1-1.98
20.99925.4612.911.30e-1-3.897.376.64e-1-2.22
31.00024.8511.473.53e-1-3.455.162.79e-1-1.55
53day-rosette11.00023.499.441.44e-3-2.843.469.12e-2-1.04
21.00024.0911.82.80e-4-3.556.091.47e-2-1.83
31.00025.2712.381.88e-4-3.735.721.90e-2-1.72
53day-stem11.00025.9212.51.73e-4-3.765.981.59e-2-1.8
21.00025.8211.044.74e-4-3.326.391.19e-2-1.92
31.00027.9310.337.78e-4-3.117.376.03e-3-2.22
53day-inflores11.00026.2712.881.33e-4-3.887.724.74e-3-2.32
20.99925.7711.144.42e-4-3.356.591.04e-2-1.98
30.99923.9910.168.72e-4-3.065.572.10e-2-1.68
53day-silique11.00028.348.492.77e-3-2.564.544.29e-2-1.37
21.00029.6310.347.71e-4-3.116.641.00e-2-2
31.00028.839.861.07e-3-2.976.131.43e-2-1.85
NGS expression data
Expression of miR823 transcript in NGS data
Sequences
miRNA transcript
AAUUUCAGAGAUACUAAUCCAAGAGAUGGCGGAUACGUUUUACAAUCACGAAUCUUGUAUGAUCACUAACCAUUGGAACAAUAAGAGUAUAUAAUGAGUAUAUCACCAUUUAGUUCUAGUGGGUGGUGAUCAUAUAAGAUUGGUAAUGGUAACAGUGAAACAUAUCCCCCAUCUAUUGGGAUUAAUUAGUC
Short sequences
sequencetypearmstartend
UGGGUGGUGAUCAUAUAAGAU
miRNA120140
AGAGATGGCGGATACGTTTTACAA
primer5p2245
ACCAATCTTATATGATCACCACCCACTA
primer3p117144

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR823 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 191 nt
MFE = -73.30 kcal/mol

COMMENTS