Expression
Switch to: Actin
In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).
The expression values are rescaled. Read more
Expression Data
Raw Data
Development stage | rep | R2 | Ct | actin | PP2A | ||||
---|---|---|---|---|---|---|---|---|---|
ΔCt | 2^(-ΔCt) | log10 | ΔCt | 2^(-ΔCt) | log10 | ||||
seed | 1 | 1.000 | 29.07 | 5.22 | 2.69e-2 | -1.57 | 5.13 | 2.86e-2 | -1.54 |
2 | 1.000 | 33.49 | 5.51 | 2.19e-2 | -1.66 | 5.64 | 2.00e-2 | -1.7 | |
3 | 1.000 | 28.8 | 4.53 | 4.33e-2 | -1.36 | 3.76 | 7.38e-2 | -1.13 | |
10day-seedling | 1 | 1.000 | 28.82 | 15.96 | 1.57e-5 | -4.8 | 10.47 | 7.07e-4 | -3.15 |
2 | - | - | - | - | N/D | - | - | N/D | |
3 | 1.000 | 30.44 | 19.08 | 1.81e-6 | -5.74 | 12.36 | 1.90e-4 | -3.72 | |
14day-seedling | 1 | 0.999 | 28.34 | 14.77 | 3.58e-5 | -4.45 | 8.13 | 3.58e-3 | -2.45 |
2 | 0.000 | 30.08 | 11.97 | 2.49e-4 | -3.6 | 9.06 | 1.87e-3 | -2.73 | |
3 | 0.999 | 32.67 | 14.89 | 3.30e-5 | -4.48 | 12.75 | 1.46e-4 | -3.84 | |
25day-aerial | 1 | 0.996 | 31.62 | 18.76 | 2.25e-6 | -5.65 | 13 | 1.22e-4 | -3.91 |
2 | 0.997 | 33.75 | 19.71 | 1.17e-6 | -5.93 | 13.46 | 8.85e-5 | -4.05 | |
3 | 0.997 | 31.71 | 17.83 | 4.29e-6 | -5.37 | 12.27 | 2.03e-4 | -3.69 | |
35day-aerial | 1 | 0.999 | 32.37 | 17.92 | 4.04e-6 | -5.39 | 12.38 | 1.88e-4 | -3.73 |
2 | 0.998 | 28.81 | 16.09 | 1.43e-5 | -4.84 | 9.96 | 1.00e-3 | -3 | |
3 | 0.999 | 28.63 | 15.44 | 2.26e-5 | -4.65 | 9.25 | 1.64e-3 | -2.78 | |
42day-rosette | 1 | 0.999 | 25.45 | 11.91 | 2.60e-4 | -3.58 | 4.8 | 3.58e-2 | -1.45 |
2 | 1.000 | 29.71 | 15.32 | 2.44e-5 | -4.61 | 9.63 | 1.26e-3 | -2.9 | |
3 | 1.000 | 32.41 | 18.89 | 2.07e-6 | -5.69 | 13.32 | 9.79e-5 | -4.01 | |
42day-stem | 1 | 0.998 | 22.23 | 1.54 | 6.73e-1 | -3.17 | 5.23 | 2.67e-1 | -1.57 |
2 | 0.996 | 22.4 | 9.85 | 1.89e-1 | -2.97 | 4.35 | 5.66e-1 | -1.3 | |
3 | 0.999 | 24.48 | 11.94 | 4.58e-1 | -3.34 | 4.79 | 3.62e-1 | -1.45 | |
53day-rosette | 1 | 1.000 | 31.23 | 17.18 | 6.74e-6 | -5.17 | 11.19 | 4.28e-4 | -3.37 |
2 | 1.000 | 27.43 | 15.15 | 2.76e-5 | -4.56 | 9.43 | 1.45e-3 | -2.84 | |
3 | 1.000 | 28.2 | 15.31 | 2.46e-5 | -4.61 | 8.65 | 2.49e-3 | -2.6 | |
53day-stem | 1 | 1.000 | 13.02 | -0.4 | 1.32e+0 | 0.12 | -6.92 | 1.21e+2 | 2.08 |
2 | 0.999 | 25.82 | 11.04 | 4.74e-4 | -3.32 | 6.39 | 1.19e-2 | -1.92 | |
3 | 0.997 | 28.44 | 10.83 | 5.49e-4 | -3.26 | 7.88 | 4.25e-3 | -2.37 | |
53day-inflores | 1 | 0.994 | 21.32 | 7.93 | 4.10e-3 | -2.39 | 2.78 | 1.46e-1 | -0.84 |
2 | 0.997 | 21.78 | 7.15 | 7.05e-3 | -2.15 | 2.59 | 1.66e-1 | -0.78 | |
3 | 1.000 | 20.34 | 6.52 | 1.09e-2 | -1.96 | 1.93 | 2.63e-1 | -0.58 | |
53day-silique | 1 | 1.000 | 29.78 | 9.94 | 1.02e-3 | -2.99 | 5.99 | 1.58e-2 | -1.8 |
2 | 1.000 | 28.77 | 9.48 | 1.40e-3 | -2.85 | 5.77 | 1.83e-2 | -1.74 | |
3 | 1.000 | 30.85 | 11.87 | 2.66e-4 | -3.57 | 8.14 | 3.54e-3 | -2.45 |
NGS expression data
Expression of miR780 transcript in NGS dataSequences
miRNA transcript
CAAGAUAUCAGAUAUUUCACGAAGAUAUCUGCAUAACAGCUACGAGGAAAUUGUGAUUUUAUCGUUUCACAAACAUCAACAGCUCCAUGGAUCGUUAUGGACGGAUAAAUCACAAUCACUAUCCUUUUUCUAGCAGCUGUUGAGCAGGUUUCUUCGUGAAUAUCUGGCAUUUUG
Short sequences
sequence | type | arm | start | end |
---|---|---|---|---|
UCUAGCAGCUGUUGAGCAGGU | miRNA | 129 | 149 | |
UUCUUCGUGAAUAUCUGGCAU | miRNA | 150 | 170 | |
TGCATAACAGCTACGAGGAAATTG | primer | 5p | 30 | 53 |
ACCTGCTCAACAGCTGCTAGAAA | primer | 3p | 127 | 149 |
For experimental procedure see:Materials and Methods
Cross-references
miRBase | miRBase record |
ASRP | ASRP record |
PMRD | PMRD record |
TAIR | TAIR record |
PubMed Entrez | The most up-to-date article(s) about miR780 found in PubMed |