miR780
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed5.469140.1514055.541650.293016
10day-seedling1.726490.6630673.563780.403655
14day-seedling2.81090.4836513.996020.735389
25day-aerial1.350560.28242.951450.438688
35day-aerial2.03850.386813.830140.49385
42day-rosette2.372281.050483.892071.77541
42day-stem3.840660.1869975.560330.139227
53day-rosette2.22030.3400284.062810.391433
53day-stem4.844141.972266.5139542.88615
53day-inflores4.833130.2135396.2673490.13518
53day-silique3.860090.3828085.002690.394429
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00029.075.222.69e-2-1.575.132.86e-2-1.54
21.00033.495.512.19e-2-1.665.642.00e-2-1.7
31.00028.84.534.33e-2-1.363.767.38e-2-1.13
10day-seedling11.00028.8215.961.57e-5-4.810.477.07e-4-3.15
2----N/D--N/D
31.00030.4419.081.81e-6-5.7412.361.90e-4-3.72
14day-seedling10.99928.3414.773.58e-5-4.458.133.58e-3-2.45
20.00030.0811.972.49e-4-3.69.061.87e-3-2.73
30.99932.6714.893.30e-5-4.4812.751.46e-4-3.84
25day-aerial10.99631.6218.762.25e-6-5.65131.22e-4-3.91
20.99733.7519.711.17e-6-5.9313.468.85e-5-4.05
30.99731.7117.834.29e-6-5.3712.272.03e-4-3.69
35day-aerial10.99932.3717.924.04e-6-5.3912.381.88e-4-3.73
20.99828.8116.091.43e-5-4.849.961.00e-3-3
30.99928.6315.442.26e-5-4.659.251.64e-3-2.78
42day-rosette10.99925.4511.912.60e-4-3.584.83.58e-2-1.45
21.00029.7115.322.44e-5-4.619.631.26e-3-2.9
31.00032.4118.892.07e-6-5.6913.329.79e-5-4.01
42day-stem10.99822.231.546.73e-1-3.175.232.67e-1-1.57
20.99622.49.851.89e-1-2.974.355.66e-1-1.3
30.99924.4811.944.58e-1-3.344.793.62e-1-1.45
53day-rosette11.00031.2317.186.74e-6-5.1711.194.28e-4-3.37
21.00027.4315.152.76e-5-4.569.431.45e-3-2.84
31.00028.215.312.46e-5-4.618.652.49e-3-2.6
53day-stem11.00013.02-0.41.32e+00.12-6.921.21e+22.08
20.99925.8211.044.74e-4-3.326.391.19e-2-1.92
30.99728.4410.835.49e-4-3.267.884.25e-3-2.37
53day-inflores10.99421.327.934.10e-3-2.392.781.46e-1-0.84
20.99721.787.157.05e-3-2.152.591.66e-1-0.78
31.00020.346.521.09e-2-1.961.932.63e-1-0.58
53day-silique11.00029.789.941.02e-3-2.995.991.58e-2-1.8
21.00028.779.481.40e-3-2.855.771.83e-2-1.74
31.00030.8511.872.66e-4-3.578.143.54e-3-2.45
NGS expression data
Expression of miR780 transcript in NGS data
Sequences
miRNA transcript
CAAGAUAUCAGAUAUUUCACGAAGAUAUCUGCAUAACAGCUACGAGGAAAUUGUGAUUUUAUCGUUUCACAAACAUCAACAGCUCCAUGGAUCGUUAUGGACGGAUAAAUCACAAUCACUAUCCUUUUUCUAGCAGCUGUUGAGCAGGUUUCUUCGUGAAUAUCUGGCAUUUUG
Short sequences
sequencetypearmstartend
UCUAGCAGCUGUUGAGCAGGU
miRNA129149
UUCUUCGUGAAUAUCUGGCAU
miRNA150170
TGCATAACAGCTACGAGGAAATTG
primer5p3053
ACCTGCTCAACAGCTGCTAGAAA
primer3p127149

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR780 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 174 nt
MFE = -65.10 kcal/mol

COMMENTS