miR776
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed3.389150.693373.461660.835033
10day-seedling0.743071.563222.580361.30381
14day-seedling2.0641804.065620
25day-aerialN/D-N/D-
35day-aerial1.965540.4055523.715390.523005
42day-rosette2.103520.8164384.17311.31932
42day-stem3.463520.1773055.181490.0858615
53day-rosette0.577160.761062.419670.906638
53day-stem2.048450.8806562.825981.51249
53day-inflores4.830630.3302036.25810.281549
53day-silique4.564670.400485.707270.432552
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00036.712.841.36e-4-3.8712.761.45e-4-3.84
21.00041.7313.757.23e-5-4.1413.896.59e-5-4.18
31.00033.669.391.49e-3-2.838.622.54e-3-2.59
10day-seedling11.00029.9717.117.05e-6-5.1511.623.18e-4-3.5
2----N/D--N/D
31.00035.8324.464.34e-8-7.3617.744.55e-6-5.34
14day-seedling11.00029.9516.381.17e-5-4.939.731.17e-3-2.93
2----N/D--N/D
3----N/D--N/D
25day-aerial1----N/D--N/D
2----N/D--N/D
3----N/D--N/D
35day-aerial11.00032.1317.684.77e-6-5.3212.142.22e-4-3.65
20.98428.4915.771.79e-5-4.759.641.25e-3-2.9
3----N/D--N/D
42day-rosette10.99126.9313.399.29e-5-4.036.291.28e-2-1.89
20.99932.5618.183.36e-6-5.4712.491.74e-4-3.76
3----N/D--N/D
42day-stem10.99723.0111.334.00e-1-3.486.161.55e-1-1.89
21.00023.8211.284.24e-1-3.45.731.88e-1-1.72
30.99925.7912.491.84e-1-3.746.121.46e-1-1.84
53day-rosette11.00035.9321.882.59e-7-6.5915.891.65e-5-4.78
21.00035.8423.558.15e-8-7.0917.834.28e-6-5.37
31.00031.4718.582.55e-6-5.5911.922.57e-4-3.59
53day-stem11.00026.8413.429.14e-5-4.046.98.38e-3-2.08
21.00029.7214.943.17e-5-4.510.297.98e-4-3.1
30.00037.4319.821.08e-6-5.9716.878.37e-6-5.08
53day-inflores10.99421.488.093.68e-3-2.432.931.31e-1-0.88
20.99922.187.555.32e-3-2.2731.25e-1-0.9
30.99119.815.981.59e-2-1.81.393.82e-1-0.42
53day-silique11.00026.867.017.75e-3-2.113.061.20e-1-0.92
21.00028.879.581.31e-3-2.885.871.71e-2-1.77
31.00026.657.684.87e-3-2.313.956.47e-2-1.19
NGS expression data
Expression of miR776 transcript in NGS data
Sequences
miRNA transcript
ACAAAUCCAUCGGAACCCUAAACAUCUCCUUGUGGCAGAGUUAUGACUUUUUACUUCCAGUGAUGAAAUUUGGUUGGGAUUAUAGCCACGAACUCAAUAGAAUUCUUAAGAUCAUGUGAAAACGUUGACAAGAUCGUCUACGAUUUUCCAAGAUUCUAAGUCUUCUAUUGAUGUUCAUGGCUUUAACCUGAUUU
Short sequences
sequencetypearmstartend
UCUAAGUCUUCUAUUGAUGUU
miRNA155175
CAAATCCATCGGAACCCTAAACA
primer5p224
AATCAGGTTAAAGCCATGAACATCAA
primer3p168193

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR776 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 194 nt
MFE = -57.90 kcal/mol

COMMENTS