Expression
Switch to: Actin
In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).
The expression values are rescaled. Read more
Expression Data
Raw Data
Development stage | rep | R2 | Ct | actin | PP2A | ||||
---|---|---|---|---|---|---|---|---|---|
ΔCt | 2^(-ΔCt) | log10 | ΔCt | 2^(-ΔCt) | log10 | ||||
seed | 1 | 1.000 | 33.63 | 9.77 | 1.15e-3 | -2.94 | 9.68 | 1.22e-3 | -2.91 |
2 | - | - | - | - | N/D | - | - | N/D | |
3 | 1.000 | 28.23 | 3.96 | 6.44e-2 | -1.19 | 3.19 | 1.10e-1 | -0.96 | |
10day-seedling | 1 | 1.000 | 15.47 | 2.61 | 1.64e-1 | -0.78 | -2.89 | 7.40e+0 | 0.87 |
2 | 1.000 | 16.72 | 3.47 | 9.01e-2 | -1.05 | -2.34 | 5.06e+0 | 0.7 | |
3 | 1.000 | 15.67 | 4.3 | 5.07e-2 | -1.29 | -2.41 | 5.32e+0 | 0.73 | |
14day-seedling | 1 | 0.997 | 19.48 | 5.91 | 1.67e-2 | -1.78 | -0.74 | 1.67e+0 | 0.22 |
2 | 0.994 | 22.29 | 4.18 | 5.52e-2 | -1.26 | 1.27 | 4.13e-1 | -0.38 | |
3 | 0.994 | 20.07 | 2.28 | 2.05e-1 | -0.69 | 0.14 | 9.05e-1 | -0.04 | |
25day-aerial | 1 | 0.999 | 16.77 | 3.91 | 6.63e-2 | -1.18 | -1.85 | 3.59e+0 | 0.56 |
2 | 0.995 | 17.96 | 3.92 | 6.61e-2 | -1.18 | -2.32 | 5.00e+0 | 0.7 | |
3 | 1.000 | 16.88 | 3 | 1.25e-1 | -0.9 | -2.57 | 5.93e+0 | 0.77 | |
35day-aerial | 1 | 0.993 | 16.81 | 2.35 | 1.96e-1 | -0.71 | -3.18 | 9.09e+0 | 0.96 |
2 | 0.999 | 17.59 | 4.87 | 3.42e-2 | -1.47 | -1.27 | 2.40e+0 | 0.38 | |
3 | 0.998 | 16.65 | 3.46 | 9.10e-2 | -1.04 | -2.73 | 6.63e+0 | 0.82 | |
42day-rosette | 1 | 0.996 | 18.16 | 4.62 | 4.05e-2 | -1.39 | -2.48 | 5.58e+0 | 0.75 |
2 | 0.998 | 17.52 | 3.14 | 1.13e-1 | -0.95 | -2.55 | 5.87e+0 | 0.77 | |
3 | 0.998 | 16.63 | 3.11 | 1.16e-1 | -0.94 | -2.46 | 5.50e+0 | 0.74 | |
42day-stem | 1 | 1.000 | 15.49 | 3.8 | 7.24e-1 | -1.14 | -1.52 | 2.86e+0 | 0.46 |
2 | 1.000 | 17.55 | 5.11 | 3.15e-1 | -1.59 | -0.54 | 1.45e+0 | 0.16 | |
3 | 0.998 | 17.18 | 3.8 | 7.24e-1 | -1.14 | -2.51 | 5.75e+0 | 0.76 | |
53day-rosette | 1 | 1.000 | 15.65 | 1.6 | 3.29e-1 | -0.48 | -4.39 | 2.09e+1 | 1.32 |
2 | 1.000 | 15.01 | 2.72 | 1.52e-1 | -0.82 | -3 | 7.99e+0 | 0.9 | |
3 | 1.000 | 16.94 | 4.05 | 6.05e-2 | -1.22 | -2.61 | 6.11e+0 | 0.79 | |
53day-stem | 1 | 0.994 | 16.55 | 3.13 | 1.14e-1 | -0.94 | -3.39 | 1.05e+1 | 1.02 |
2 | 1.000 | 16.29 | 1.52 | 3.49e-1 | -0.46 | -3.13 | 8.78e+0 | 0.94 | |
3 | 0.998 | 18.95 | 1.35 | 3.93e-1 | -0.41 | -1.61 | 3.04e+0 | 0.48 | |
53day-inflores | 1 | - | - | 5.15 | 2.81e-2 | -1.55 | - | - | N/D |
2 | 0.999 | 18.65 | 4.02 | 6.16e-2 | -1.21 | -0.54 | 1.45e+0 | 0.16 | |
3 | 0.996 | 17.05 | 3.22 | 1.07e-1 | -0.97 | -1.37 | 2.58e+0 | 0.41 | |
53day-silique | 1 | 1.000 | 26.18 | 6.33 | 1.24e-2 | -1.91 | 2.38 | 1.92e-1 | -0.72 |
2 | 1.000 | 24.39 | 5.1 | 2.92e-2 | -1.53 | 1.39 | 3.81e-1 | -0.42 | |
3 | 1.000 | 25.64 | 6.67 | 9.85e-3 | -2.01 | 2.93 | 1.31e-1 | -0.88 |
NGS expression data
Expression of miR414 transcript in NGS dataSequences
miRNA transcript
AGGAUGCGGAAGAGAUCAUCAUUAUCAUCAUCAUCAUAUUCAUCUUCAUCAUCAUCGUCAUCAUCAUCAUCAUCAUCGUAUGAGAAGAUAGAGAAGAGUGAGAGUAUGAGAUUUGAGUUGAGAAGCAAAAAGGCUCA
Short sequences
sequence | type | arm | start | end |
---|---|---|---|---|
UCAUCUUCAUCAUCAUCGUCA | miRNA | 40 | 60 | |
GGATGCGGAAGAGATCATCATTAT | primer | 5p | 2 | 25 |
GAGCCTTTTTGCTTCTCAACTCAA | primer | 3p | 113 | 136 |
For experimental procedure see:Materials and Methods
Cross-references
miRBase | miRBase record |
PMRD | PMRD record |
TAIR | TAIR record |
PubMed Entrez | The most up-to-date article(s) about miR414 found in PubMed |