miR414
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed4.933971.237085.062881.38235
10day-seedling5.958270.2550567.7664220.0894673
14day-seedling5.758910.545516.8015390.365172
25day-aerial5.907750.1504567.6758760.110589
35day-aerial5.78040.3799457.7228430.297534
42day-rosette5.908980.2608397.7525870.0137232
42day-stem5.709820.2559397.458310.297173
53day-rosette6.1603240.3680388.002830.280851
53day-stem6.3775360.2772147.8752540.362764
53day-inflores5.751380.2938937.3801620.204863
53day-silique5.184330.248976.3269230.235257
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00033.639.771.15e-3-2.949.681.22e-3-2.91
2----N/D--N/D
31.00028.233.966.44e-2-1.193.191.10e-1-0.96
10day-seedling11.00015.472.611.64e-1-0.78-2.897.40e+00.87
21.00016.723.479.01e-2-1.05-2.345.06e+00.7
31.00015.674.35.07e-2-1.29-2.415.32e+00.73
14day-seedling10.99719.485.911.67e-2-1.78-0.741.67e+00.22
20.99422.294.185.52e-2-1.261.274.13e-1-0.38
30.99420.072.282.05e-1-0.690.149.05e-1-0.04
25day-aerial10.99916.773.916.63e-2-1.18-1.853.59e+00.56
20.99517.963.926.61e-2-1.18-2.325.00e+00.7
31.00016.8831.25e-1-0.9-2.575.93e+00.77
35day-aerial10.99316.812.351.96e-1-0.71-3.189.09e+00.96
20.99917.594.873.42e-2-1.47-1.272.40e+00.38
30.99816.653.469.10e-2-1.04-2.736.63e+00.82
42day-rosette10.99618.164.624.05e-2-1.39-2.485.58e+00.75
20.99817.523.141.13e-1-0.95-2.555.87e+00.77
30.99816.633.111.16e-1-0.94-2.465.50e+00.74
42day-stem11.00015.493.87.24e-1-1.14-1.522.86e+00.46
21.00017.555.113.15e-1-1.59-0.541.45e+00.16
30.99817.183.87.24e-1-1.14-2.515.75e+00.76
53day-rosette11.00015.651.63.29e-1-0.48-4.392.09e+11.32
21.00015.012.721.52e-1-0.82-37.99e+00.9
31.00016.944.056.05e-2-1.22-2.616.11e+00.79
53day-stem10.99416.553.131.14e-1-0.94-3.391.05e+11.02
21.00016.291.523.49e-1-0.46-3.138.78e+00.94
30.99818.951.353.93e-1-0.41-1.613.04e+00.48
53day-inflores10.99618.545.152.81e-2-1.55--N/D
20.99918.654.026.16e-2-1.21-0.541.45e+00.16
30.99617.053.221.07e-1-0.97-1.372.58e+00.41
53day-silique11.00026.186.331.24e-2-1.912.381.92e-1-0.72
21.00024.395.12.92e-2-1.531.393.81e-1-0.42
31.00025.646.679.85e-3-2.012.931.31e-1-0.88
NGS expression data
Expression of miR414 transcript in NGS data
Sequences
miRNA transcript
AGGAUGCGGAAGAGAUCAUCAUUAUCAUCAUCAUCAUAUUCAUCUUCAUCAUCAUCGUCAUCAUCAUCAUCAUCAUCGUAUGAGAAGAUAGAGAAGAGUGAGAGUAUGAGAUUUGAGUUGAGAAGCAAAAAGGCUCA
Short sequences
sequencetypearmstartend
UCAUCUUCAUCAUCAUCGUCA
miRNA4060
GGATGCGGAAGAGATCATCATTAT
primer5p225
GAGCCTTTTTGCTTCTCAACTCAA
primer3p113136

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR414 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 137 nt
MFE = -27.66 kcal/mol

COMMENTS