miR398b
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed5.965450.2566246.0379590.123991
10day-seedling5.592860.4821647.4010180.340333
14day-seedling5.883510.6732187.1852840.35822
25day-aerial5.861930.3808137.6395060.31405
35day-aerial5.583360.6855827.7947580.606406
42day-rosette5.839040.2869287.7680560.0653109
42day-stem4.869260.6505396.854280.358883
53day-rosette6.4083550.3870818.250860.365999
53day-stem5.625180.4628527.1427380.237087
53day-inflores4.913560.1699016.396540.0708635
53day-silique5.719390.09695976.8619890.0694974
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00026.792.941.31e-1-0.882.851.39e-1-0.86
21.00030.932.951.29e-1-0.893.091.18e-1-0.93
31.00028.694.424.67e-2-1.333.657.96e-2-1.1
10day-seedling11.00015.722.861.37e-1-0.86-2.636.19e+00.79
21.00018.55.252.62e-2-1.58-0.561.48e+00.17
31.00017.285.911.67e-2-1.78-0.811.75e+00.24
14day-seedling10.99819.86.231.34e-2-1.87-0.421.34e+00.13
20.99421.062.951.29e-1-0.890.059.68e-1-0.01
30.99919.741.952.59e-1-0.59-0.191.14e+00.06
25day-aerial10.99915.352.51.77e-1-0.75-3.269.61e+00.98
21.00019.075.033.07e-2-1.51-1.222.32e+00.37
31.00017.553.677.85e-2-1.1-1.893.71e+00.57
35day-aerial10.99916.552.12.34e-1-0.63-3.441.09e+11.04
20.99818.325.62.07e-2-1.68-0.541.45e+00.16
31.00016.553.359.79e-2-1.01-2.837.13e+00.85
42day-rosette11.00018.294.753.72e-2-1.43-2.365.12e+00.71
21.00017.773.399.56e-2-1.02-2.314.94e+00.69
30.99916.382.851.38e-1-0.86-2.726.57e+00.82
42day-stem10.99818.636.938.17e-1-2.881.623.24e-1-0.49
20.99918.676.131.43e-1-1.850.596.69e-1-0.17
30.99918.945.552.13e-1-1.67-0.751.69e+00.23
53day-rosette11.00014.540.497.13e-1-0.15-5.54.53e+11.66
21.00014.872.581.67e-1-0.78-3.148.80e+00.94
31.00015.722.831.41e-1-0.85-3.831.42e+11.15
53day-stem11.00019.225.81.80e-2-1.75-0.721.65e+00.22
20.99919.845.063.00e-2-1.520.417.54e-1-0.12
30.99920.452.841.39e-1-0.86-0.111.08e+00.03
53day-inflores10.99920.717.316.28e-3-2.22.162.24e-1-0.65
21.00020.926.291.28e-2-1.891.743.00e-1-0.52
31.00020.526.699.67e-3-2.012.12.33e-1-0.63
53day-silique11.00024.374.524.35e-2-1.360.576.72e-1-0.17
21.00023.193.96.71e-2-1.170.198.75e-1-0.06
31.00023.314.344.93e-2-1.310.616.55e-1-0.18
NGS expression data
Expression of miR398b transcript in NGS data
Sequences
miRNA transcript
AGUGGAUCUCGACAGGGUUGAUAUGAGAACACACGAGUAAUCAACGGCUGUAAUGACGCUACGUCAUUGUUACAGCUCUCGUUUUCAUGUGUUCUCAGGUCACCCCUGCUGAGCUCUU
Short sequences
sequencetypearmstartend
UGUGUUCUCAGGUCACCCCUG
miRNA88108
AGTGGATCTCGACAGGGTTG
primer5p120
GGGGTGACCTGAGAACACAT
primer3p87106

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR398b found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 118 nt
MFE = -51.50 kcal/mol

COMMENTS