miR397b
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed3.497260.1186383.569780.258343
10day-seedling1.55150.4719193.388790.212506
14day-seedling2.0818304.081780
25day-aerial0.8051802.543140
35day-aerial-0.5178201.328330
42day-rosette1.3261903.002170
42day-stem0.168840.7582581.80330.707407
53day-rosette1.085750.2539532.948070.053651
53day-stem0.838491.41982.233180.948966
53day-inflores1.920220.1315723.266990.113382
53day-silique3.093990.5737624.236590.609214
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00035.7311.872.67e-4-3.5711.782.84e-4-3.55
21.00039.8411.862.69e-4-3.5711.992.46e-4-3.61
31.00035.4511.184.31e-4-3.3710.417.34e-4-3.13
10day-seedling11.00029.8516.997.68e-6-5.1111.53.46e-4-3.46
2----N/D--N/D
31.00030.5819.211.65e-6-5.7812.51.73e-4-3.76
14day-seedling11.00029.9116.341.21e-5-4.929.691.21e-3-2.92
2----N/D--N/D
3----N/D--N/D
25day-aerial10.99833.4220.566.45e-7-6.1914.813.49e-5-4.46
2----N/D--N/D
3----N/D--N/D
35day-aerial1----N/D--N/D
20.98437.724.973.04e-8-7.5218.842.13e-6-5.67
3----N/D--N/D
42day-rosette1----N/D--N/D
2----N/D--N/D
30.99932.3718.852.12e-6-5.6713.281.01e-4-4
42day-stem10.99932.62.915.74e-7-6.2915.612.11e-1-4.7
20.99537.0224.474.29e-1-7.3718.922.95e-1-5.7
3----N/D--N/D
53day-rosette1----N/D--N/D
21.00031.3419.051.84e-6-5.7313.339.68e-5-4.01
31.00033.1320.248.06e-7-6.0913.598.13e-5-4.09
53day-stem11.00037.5724.155.36e-8-7.2717.634.92e-6-5.31
21.00036.8522.072.27e-7-6.6417.425.70e-6-5.24
31.00032.7615.162.73e-5-4.5612.22.12e-4-3.67
53day-inflores1----N/D--N/D
20.99931.8117.186.72e-6-5.1712.631.58e-4-3.8
31.00030.3916.571.03e-5-4.9911.982.48e-4-3.61
53day-silique11.00030.8210.974.99e-4-3.37.027.71e-3-2.11
21.00032.4913.21.07e-4-3.979.491.39e-3-2.86
31.00033.7314.763.60e-5-4.4411.034.78e-4-3.32
NGS expression data
Expression of miR397b transcript in NGS data
Sequences
miRNA transcript
CAAAAAGAAUCUACAGCCCCCAAAAAAUAAGAUUUAGUACAAUUCCUUAAUCGUACACAGUAGUACAAGCAAGCAUUGUACUGCUUUCAAACCAAAGACACGACCAAAUGUCUUAUAAAUGAUAUUUGUGUUUAUCUCCAUGGUAAUAGAAAUGAGCAAGGAGAUAUUUUUUUCCCCUGGGUUUGAAUGAACAUCAUUGAGUGCAUCGUUGAUGUAAUUUUACUUAUUUUAUUCCAUUGUUGAAUUAAUUAAAGAAGUAUAUAUCAGCGUUGCAUUCAAUUAUGUUUUUCUA
Short sequences
sequencetypearmstartend
UCAUUGAGUGCAUCGUUGAUG
miRNA194214
CAAAAAGAATCTACAGCCCCCAAA
primer5p124
GTTCATTCAAACCCAGGGGAAA
primer3p171192

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR397b found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 292 nt
MFE = -76.83 kcal/mol

COMMENTS