miR395f
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed4.561710.5800214.634220.584353
10day-seedling1.012570.6474922.820730.493196
14day-seedling2.287690.2207584.115480.463764
25day-aerial1.2050203.084350
35day-aerial0.3577202.203370
42day-rosette1.241380.1691732.929910.215751
42day-stem0.247281.171611.879041.12456
53day-rosette0.383311.266832.225821.12264
53day-stem1.096050.392172.51350.635424
53day-inflores1.317850.7279642.694830.720112
53day-silique3.22651.024664.369091.06321
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00034.0210.178.70e-4-3.0610.089.24e-4-3.03
21.00034.336.351.22e-2-1.916.491.11e-2-1.95
31.00032.057.784.55e-3-2.347.017.76e-3-2.11
10day-seedling11.00032.1519.291.56e-6-5.8113.797.05e-5-4.15
21.00031.3518.113.55e-6-5.4512.291.99e-4-3.7
31.00033.6522.281.97e-7-6.7115.572.06e-5-4.69
14day-seedling11.00028.7115.142.78e-5-4.568.492.78e-3-2.56
21.00031.6913.588.19e-5-4.0910.676.13e-4-3.21
3----N/D--N/D
25day-aerial1----N/D--N/D
21.00033.2919.251.60e-6-5.7913.011.21e-4-3.92
3----N/D--N/D
35day-aerial1----N/D--N/D
20.99934.7922.072.28e-7-6.6415.931.60e-5-4.8
3----N/D--N/D
42day-rosette1----N/D--N/D
20.99433.0918.712.34e-6-5.6313.011.21e-4-3.92
31.00033.0519.531.32e-6-5.8813.966.28e-5-4.2
42day-stem11.00031.3719.681.20e-1-5.9214.374.72e-1-4.33
20.99737.7325.182.62e-1-7.5819.631.23e-1-5.92
3----N/D--N/D
53day-rosette11.00035.5421.493.39e-7-6.4715.52.15e-5-4.67
21.00030.3218.043.72e-6-5.4312.321.95e-4-3.71
31.00039.326.411.12e-8-7.9519.751.13e-6-5.95
53day-stem10.99932.4419.021.88e-6-5.7312.51.73e-4-3.76
21.00035.8821.114.43e-7-6.3516.451.11e-5-4.95
30.99836.3218.712.33e-6-5.6315.761.80e-5-4.74
53day-inflores1----N/D--N/D
20.99931.7917.176.80e-6-5.1712.611.60e-4-3.8
30.99534.4120.586.37e-7-6.215.991.53e-5-4.81
53day-silique11.00028.88.962.01e-3-2.75.013.11e-2-1.51
21.00035.0215.731.84e-5-4.7412.032.39e-4-3.62
31.00031.8912.921.29e-4-3.899.181.72e-3-2.76
NGS expression data
Expression of miR395f transcript in NGS data
Sequences
miRNA transcript
CAGUUUGGGUUGUCGCUAAGGUCAGUUGAGUAAGAGAAGAAGCAUUUGCAAAAGAGACAUAACAUGUAAAGUCAAAUGUCCCCUUGAGUUCCCUUAAACGCUUCAUUGUUCAUACUUUGUUAUCAUCUAUCGAUCGAUCAAUCAAUCUGAUGAACACUGAAGUGUUUGGGGGGACUCUAGGUGACAU
Short sequences
sequencetypearmstartend
CUGAAGUGUUUGGGGGGACUC
miRNA157177
CAGTTTGGGTTGTCGCTAAGGT
primer5p122
ACAAAGTATGAACAATGAAGCGTTTAAG
primer3p93120

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR395f found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 187 nt
MFE = -61.81 kcal/mol

COMMENTS