miR1887
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed4.153570.5823324.226080.57171
10day-seedling-0.412790.5115711.42450.770984
14day-seedling2.55360.2712734.278070.661148
25day-aerialN/D-N/D-
35day-aerial0.7440102.825660
42day-rosette0.112071.44932.448831.16923
42day-stem1.508150.1582613.230580.204846
53day-rosette3.366615.305645.209125.26686
53day-stem0.422071.621751.847980.863016
53day-inflores2.787280.2928564.224030.20251
53day-silique3.47180.7998114.614390.838584
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00031.097.236.66e-3-2.187.147.07e-3-2.15
21.00038.7210.745.84e-4-3.2310.885.32e-4-3.27
31.00034.6710.397.43e-4-3.139.631.27e-3-2.9
10day-seedling11.00038.6925.831.68e-8-7.7720.337.57e-7-6.12
2----N/D--N/D
31.00034.7923.428.89e-8-7.0516.719.33e-6-5.03
14day-seedling11.00027.7114.135.56e-5-4.257.495.57e-3-2.25
20.99831.6113.58.63e-5-4.0610.66.47e-4-3.19
3----N/D--N/D
25day-aerial1----N/D--N/D
2----N/D--N/D
3----N/D--N/D
35day-aerial1----N/D--N/D
20.99932.72209.54e-7-6.0213.876.69e-5-4.17
3----N/D--N/D
42day-rosette10.99833.0219.481.37e-6-5.8612.371.89e-4-3.72
21.00037.9423.568.10e-8-7.0917.874.19e-6-5.38
3----N/D--N/D
42day-stem11.00029.4317.744.56e-6-5.3412.431.89e-1-3.74
20.99931.3318.792.24e-1-5.6613.241.32e-1-3.99
31.00031.5818.23.33e-6-5.4811.892.64e-1-3.58
53day-rosette11.0005.79-8.263.07e+22.49-14.251.95e+44.29
21.00033.7321.443.50e-7-6.4615.731.84e-5-4.73
31.00035.9223.031.17e-7-6.9316.371.18e-5-4.93
53day-stem10.00039.0825.661.89e-8-7.7219.141.73e-6-5.76
2----N/D--N/D
30.99635.6518.043.71e-6-5.4315.092.87e-5-4.54
53day-inflores10.99928.4115.023.02e-5-4.529.861.07e-3-2.97
21.00028.4613.836.85e-5-4.169.281.61e-3-2.79
30.99626.9413.111.13e-4-3.958.522.72e-3-2.57
53day-silique11.00028.568.722.38e-3-2.624.773.67e-2-1.43
21.00031.9712.681.52e-4-3.828.981.99e-3-2.7
31.00032.7413.767.19e-5-4.1410.039.55e-4-3.02
NGS expression data
Expression of miR1887 transcript in NGS data
Sequences
miRNA transcript
UUGUUCACUUAGAUUGUUCUUAGUAUGAGGUGUUCUCGUACUAAGUAGAGUCUAAGAGAACAAGAUCAUUUUAUAUUUUAAUUUACACAAAAGUCAUAAGAUCCGUUGGUUCUUUUU
Short sequences
sequencetypearmstartend
UACUAAGUAGAGUCUAAGAGA
miRNA3959
TTGTTCTTAGTATGAGGTGTTCTCG
primer5p1438
AAAAGAACCAACGGATCTTATGAC
primer3p93116

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
PMRDPMRD record
PubMed EntrezThe most up-to-date article(s) about miR1887 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 117 nt
MFE = -33.20 kcal/mol

COMMENTS