Expression
Switch to: PP2A
In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-9).
The expression values are rescaled. Read more
Expression Data
Raw Data
Development stage | rep | R2 | Ct | actin | PP2A | ||||
---|---|---|---|---|---|---|---|---|---|
ΔCt | 2^(-ΔCt) | log10 | ΔCt | 2^(-ΔCt) | log10 | ||||
seed | 1 | - | - | - | - | N/D | - | - | N/D |
2 | 1.000 | 35.8 | 7.82 | 4.41e-3 | -2.36 | 7.96 | 4.02e-3 | -2.4 | |
3 | 1.000 | 34.16 | 9.89 | 1.06e-3 | -2.98 | 9.12 | 1.80e-3 | -2.74 | |
10day-seedling | 1 | 1.000 | 29.94 | 17.08 | 7.20e-6 | -5.14 | 11.59 | 3.25e-4 | -3.49 |
2 | 1.000 | 33.87 | 20.62 | 6.20e-7 | -6.21 | 14.81 | 3.48e-5 | -4.46 | |
3 | 1.000 | 32.04 | 20.67 | 5.99e-7 | -6.22 | 13.96 | 6.28e-5 | -4.2 | |
14day-seedling | 1 | 0.998 | 28.33 | 14.75 | 3.62e-5 | -4.44 | 8.11 | 3.62e-3 | -2.44 |
2 | 0.000 | 36.58 | 18.47 | 2.76e-6 | -5.56 | 15.56 | 2.07e-5 | -4.68 | |
3 | 0.997 | 34.7 | 16.91 | 8.10e-6 | -5.09 | 14.77 | 3.57e-5 | -4.45 | |
25day-aerial | 1 | - | - | - | - | N/D | - | - | N/D |
2 | - | - | - | - | N/D | - | - | N/D | |
3 | 1.000 | 30.66 | 16.78 | 8.89e-6 | -5.05 | 11.22 | 4.20e-4 | -3.38 | |
35day-aerial | 1 | 0.996 | 30.05 | 15.6 | 2.01e-5 | -4.7 | 10.06 | 9.35e-4 | -3.03 |
2 | 1.000 | 27.38 | 14.66 | 3.87e-5 | -4.41 | 8.52 | 2.72e-3 | -2.57 | |
3 | 0.000 | 28.96 | 15.77 | 1.79e-5 | -4.75 | 9.58 | 1.30e-3 | -2.88 | |
42day-rosette | 1 | 0.998 | 25.57 | 12.03 | 2.39e-4 | -3.62 | 4.93 | 3.29e-2 | -1.48 |
2 | - | - | - | - | N/D | - | - | N/D | |
3 | 1.000 | 27.78 | 14.26 | 5.10e-5 | -4.29 | 8.69 | 2.42e-3 | -2.62 | |
42day-stem | 1 | 0.999 | 22.27 | 1.58 | 6.53e-1 | -3.19 | 5.28 | 2.59e-1 | -1.59 |
2 | 1.000 | 23.73 | 11.19 | 4.29e-1 | -3.37 | 5.64 | 2.92e-1 | -1.7 | |
3 | 1.000 | 24.23 | 1.84 | 5.45e-1 | -3.26 | 4.54 | 4.31e-1 | -1.37 | |
53day-rosette | 1 | 1.000 | 33.46 | 19.41 | 1.44e-6 | -5.84 | 13.42 | 9.13e-5 | -4.04 |
2 | 1.000 | 29.26 | 16.97 | 7.77e-6 | -5.11 | 11.26 | 4.09e-4 | -3.39 | |
3 | 1.000 | 30.14 | 17.25 | 6.44e-6 | -5.19 | 10.59 | 6.50e-4 | -3.19 | |
53day-stem | 1 | 0.999 | 24.67 | 11.24 | 4.12e-4 | -3.38 | 4.73 | 3.78e-2 | -1.42 |
2 | 1.000 | 23.48 | 8.71 | 2.40e-3 | -2.62 | 4.05 | 6.03e-2 | -1.22 | |
3 | 0.999 | 22.3 | 4.7 | 3.85e-2 | -1.41 | 1.75 | 2.98e-1 | -0.53 | |
53day-inflores | 1 | 0.999 | 23.69 | 10.3 | 7.94e-4 | -3.1 | 5.14 | 2.83e-2 | -1.55 |
2 | 1.000 | 23.62 | 8.99 | 1.96e-3 | -2.71 | 4.44 | 4.62e-2 | -1.34 | |
3 | 0.998 | 22.72 | 8.89 | 2.11e-3 | -2.68 | 4.3 | 5.09e-2 | -1.29 | |
53day-silique | 1 | 1.000 | 27.41 | 7.57 | 5.28e-3 | -2.28 | 3.62 | 8.16e-2 | -1.09 |
2 | 1.000 | 27.25 | 7.95 | 4.03e-3 | -2.39 | 4.25 | 5.26e-2 | -1.28 | |
3 | 1.000 | 26.83 | 7.85 | 4.32e-3 | -2.36 | 4.12 | 5.74e-2 | -1.24 |
Nothern hybridization
NGS expression data
Expression of miR172d transcript in NGS dataSequences
miRNA transcript
ACCCUAAAUCUCUUCCUCUCCUUCAGAUCUCUUUAGUCUUUACUAUUAGGGUUAGCAUGUUGAUGACUUCAGAUUCUGAAGUUAGUGGCAGUCAUUGUUUGCUAUUGCAACAUCUUCAAGAUUCAGAAAUCAGAUUCUCUUAUGGGUUUUCUUUUGAGCCUUUAUUUUUUGGUUUGAGAAUCUUGAUGAUGCUGCAGCGGCAAUUAAAUGGCU
Short sequences
sequence | type | arm | start | end |
---|---|---|---|---|
AGAAUCUUGAUGAUGCUGCAG | miRNA | 177 | 197 | |
ACCCTAAATCTCTTCCTCTCCTTCAG | primer | 5p | 1 | 26 |
TCAAAAGAAAACCCATAAGAGAATCTG | primer | 3p | 131 | 157 |
For experimental procedure see:Materials and Methods
Cross-references
miRBase | miRBase record |
ASRP | ASRP record |
PMRD | PMRD record |
TAIR | TAIR record |
PubMed Entrez | The most up-to-date article(s) about miR172d found in PubMed |