miR172d
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed4.334070.4390384.429750.24678
10day-seedling1.142240.6194682.95040.502366
14day-seedling1.695210.7685543.142181.23262
25day-aerial1.4885803.623530
35day-aerial2.381420.1804694.085490.363948
42day-rosette3.042850.4745924.950250.801871
42day-stem3.727820.09136555.450310.168873
53day-rosette1.618910.4017463.461420.445498
53day-stem4.525240.9936015.944130.470413
53day-inflores4.145560.2337425.607470.136847
53day-silique4.654420.06064095.797010.100958
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed1----N/D--N/D
21.00035.87.824.41e-3-2.367.964.02e-3-2.4
31.00034.169.891.06e-3-2.989.121.80e-3-2.74
10day-seedling11.00029.9417.087.20e-6-5.1411.593.25e-4-3.49
21.00033.8720.626.20e-7-6.2114.813.48e-5-4.46
31.00032.0420.675.99e-7-6.2213.966.28e-5-4.2
14day-seedling10.99828.3314.753.62e-5-4.448.113.62e-3-2.44
20.00036.5818.472.76e-6-5.5615.562.07e-5-4.68
30.99734.716.918.10e-6-5.0914.773.57e-5-4.45
25day-aerial1----N/D--N/D
2----N/D--N/D
31.00030.6616.788.89e-6-5.0511.224.20e-4-3.38
35day-aerial10.99630.0515.62.01e-5-4.710.069.35e-4-3.03
21.00027.3814.663.87e-5-4.418.522.72e-3-2.57
30.00028.9615.771.79e-5-4.759.581.30e-3-2.88
42day-rosette10.99825.5712.032.39e-4-3.624.933.29e-2-1.48
2----N/D--N/D
31.00027.7814.265.10e-5-4.298.692.42e-3-2.62
42day-stem10.99922.271.586.53e-1-3.195.282.59e-1-1.59
21.00023.7311.194.29e-1-3.375.642.92e-1-1.7
31.00024.231.845.45e-1-3.264.544.31e-1-1.37
53day-rosette11.00033.4619.411.44e-6-5.8413.429.13e-5-4.04
21.00029.2616.977.77e-6-5.1111.264.09e-4-3.39
31.00030.1417.256.44e-6-5.1910.596.50e-4-3.19
53day-stem10.99924.6711.244.12e-4-3.384.733.78e-2-1.42
21.00023.488.712.40e-3-2.624.056.03e-2-1.22
30.99922.34.73.85e-2-1.411.752.98e-1-0.53
53day-inflores10.99923.6910.37.94e-4-3.15.142.83e-2-1.55
21.00023.628.991.96e-3-2.714.444.62e-2-1.34
30.99822.728.892.11e-3-2.684.35.09e-2-1.29
53day-silique11.00027.417.575.28e-3-2.283.628.16e-2-1.09
21.00027.257.954.03e-3-2.394.255.26e-2-1.28
31.00026.837.854.32e-3-2.364.125.74e-2-1.24

Nothern hybridization
NGS expression data
Expression of miR172d transcript in NGS data
Sequences
miRNA transcript
ACCCUAAAUCUCUUCCUCUCCUUCAGAUCUCUUUAGUCUUUACUAUUAGGGUUAGCAUGUUGAUGACUUCAGAUUCUGAAGUUAGUGGCAGUCAUUGUUUGCUAUUGCAACAUCUUCAAGAUUCAGAAAUCAGAUUCUCUUAUGGGUUUUCUUUUGAGCCUUUAUUUUUUGGUUUGAGAAUCUUGAUGAUGCUGCAGCGGCAAUUAAAUGGCU
Short sequences
sequencetypearmstartend
AGAAUCUUGAUGAUGCUGCAG
miRNA177197
ACCCTAAATCTCTTCCTCTCCTTCAG
primer5p126
TCAAAAGAAAACCCATAAGAGAATCTG
primer3p131157

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR172d found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 213 nt
MFE = -67.60 kcal/mol

COMMENTS