miR169m
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed2.7740503.005670
10day-seedling3.937470.2401375.745630.424542
14day-seedling4.763340.3763125.936560.48933
25day-aerial4.614760.3797746.3971830.383555
35day-aerial3.936760.6376635.966420.336187
42day-rosette3.172420.6278335.153360.527195
42day-stem2.852130.3591774.495590.398179
53day-rosette1.638980.1900433.400760.248154
53day-stem3.686175.534115.103185.44743
53day-inflores2.107490.7952763.545750.70415
53day-silique3.264880.8141814.407470.853242
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed1----N/D--N/D
2----N/D--N/D
31.00038.3114.045.94e-5-4.2313.271.01e-4-3.99
10day-seedling11.00023.86114.89e-4-3.315.52.20e-2-1.66
21.00023.3610.119.02e-4-3.044.35.07e-2-1.29
31.00020.789.411.47e-3-2.832.691.55e-1-0.81
14day-seedling11.00021.988.42.95e-3-2.531.762.95e-1-0.53
20.98225.977.864.31e-3-2.374.953.23e-2-1.49
30.98723.816.021.54e-2-1.813.886.78e-2-1.17
25day-aerial10.99821.919.051.89e-3-2.723.291.02e-1-0.99
20.99822.28.163.50e-3-2.461.922.65e-1-0.58
30.99920.226.341.24e-2-1.910.775.85e-1-0.23
35day-aerial10.99924.6810.238.33e-4-3.084.693.87e-2-1.41
20.99921.428.72.41e-3-2.622.561.69e-1-0.77
30.99722.429.231.67e-3-2.783.041.21e-1-0.92
42day-rosette10.99928.6615.122.80e-5-4.558.023.86e-3-2.41
20.99825.911.523.40e-4-3.475.831.76e-2-1.75
31.00023.6410.128.99e-4-3.054.554.26e-2-1.37
42day-stem11.00026.8415.152.75e-1-4.569.841.93e-1-2.96
20.99925.5212.971.24e-1-3.957.425.82e-1-2.23
31.00026.4413.551.18e-1-3.936.759.40e-1-2.32
53day-rosette11.00031.4117.365.93e-6-5.2311.373.77e-4-3.42
21.00030.5418.263.20e-6-5.512.541.68e-4-3.77
3----N/D--N/D
53day-stem11.00038.2524.823.37e-8-7.4718.33.09e-6-5.51
20.0004.92-9.869.27e+22.97-14.512.33e+44.37
30.99935.6618.063.66e-6-5.4415.12.84e-5-4.55
53day-inflores10.99932.3318.941.99e-6-5.713.787.09e-5-4.15
20.99730.7216.091.44e-5-4.8411.533.38e-4-3.47
30.97927.5313.77.53e-5-4.129.111.81e-3-2.74
53day-silique11.00029.369.511.37e-3-2.865.562.12e-2-1.67
21.00034.1614.873.34e-5-4.4811.164.36e-4-3.36
31.00031.8112.841.36e-4-3.879.111.81e-3-2.74
NGS expression data
Expression of miR169m transcript in NGS data
Sequences
miRNA transcript
AUUUUCGCAGUUGGUUUCAAAAGUUUUUGUUAUAGUAUAUGAAAGUGAGUGUAUACAUUAUUUAGAAGGAGAAGUCAAAGAUGAAUAGAAGAAUCAUAUUUGGUAGCCAAGGAUGACUUGCCUGUUUCUUUGAGUAAAAUGGGUUAGUGUCAUGUUUGACAAGUGACUAUAAGUUAUAUCAAGCAAUGACCAUUUUACUCAUCAAAAGACAUCAGGCAGUCUCCUUGGCUAUCCUUAUAUGUUCUUCUCUCUCAUCUCAGACGUUUACCUUCAU
Short sequences
sequencetypearmstartend
UAGCCAAGGAUGACUUGCCUG
miRNA104124
TTTTCGCAGTTGGTTTCAAAAGTT
primer5p225
GAAACAGGCAAGTCATCCTTGG
primer3p107128

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR169m found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 274 nt
MFE = -99.96 kcal/mol

COMMENTS