miR168a
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed6.1666370.1869466.2391490.325298
10day-seedling4.279820.3867656.0879750.236611
14day-seedling4.838010.7105486.0113670.238657
25day-aerial4.559360.1612936.3218910.0683132
35day-aerial4.524720.2706716.3219750.203927
42day-rosette4.681210.1582886.5253830.134632
42day-stem4.608280.1212656.330790.137401
53day-rosette4.995080.2337166.837580.185551
53day-stem4.846280.5837876.3216610.0695445
53day-inflores4.813420.07513956.3070230.0564237
53day-silique4.924390.1194856.0669870.0790697
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00026.622.771.47e-1-0.832.681.56e-1-0.81
21.00031.373.399.54e-2-1.023.528.69e-2-1.06
31.00026.422.152.26e-1-0.651.383.84e-1-0.42
10day-seedling11.00020.487.625.09e-3-2.292.132.29e-1-0.64
21.00022.619.361.52e-3-2.823.558.54e-2-1.07
31.00021.4910.138.95e-4-3.053.419.39e-2-1.03
14day-seedling10.99822.99.331.56e-3-2.812.681.56e-1-0.81
20.99625.217.17.30e-3-2.144.195.46e-2-1.26
30.99622.654.863.43e-2-1.462.731.51e-1-0.82
25day-aerial10.996218.153.53e-3-2.452.391.91e-1-0.72
20.99822.678.622.54e-3-2.62.381.92e-1-0.72
30.99921.437.555.32e-3-2.271.992.52e-1-0.6
35day-aerial10.99921.777.316.28e-3-2.21.782.92e-1-0.54
21.00021.889.161.75e-3-2.763.031.23e-1-0.91
30.99921.338.143.55e-3-2.451.952.59e-1-0.59
42day-rosette10.99821.818.273.25e-3-2.491.164.47e-1-0.35
20.99921.597.216.75e-3-2.171.523.49e-1-0.46
30.99821.147.625.09e-3-2.292.052.42e-1-0.62
42day-stem10.99819.758.663.75e-1-2.432.751.49e-1-0.83
20.99920.047.55.53e-1-2.261.952.59e-1-0.59
31.00021.668.283.22e-1-2.491.982.56e-1-0.59
53day-rosette11.00019.895.841.75e-2-1.76-0.151.11e+00.04
21.00019.046.769.25e-3-2.031.044.86e-1-0.31
31.00020.287.385.99e-3-2.220.736.04e-1-0.22
53day-stem10.99922.459.031.92e-3-2.722.511.76e-1-0.75
21.00021.486.719.57e-3-2.022.052.41e-1-0.62
31.00022.765.152.81e-2-1.552.22.18e-1-0.66
53day-inflores10.99920.917.515.47e-3-2.262.361.95e-1-0.71
21.00021.6377.79e-3-2.112.451.83e-1-0.74
30.99920.516.689.75e-3-2.012.092.35e-1-0.63
53day-silique11.00027.27.356.12e-3-2.213.49.46e-2-1.02
21.00025.956.669.92e-3-22.951.29e-1-0.89
31.00025.656.689.77e-3-2.012.941.30e-1-0.89
NGS expression data
Expression of miR168a transcript in NGS data
Sequences
miRNA transcript
CACCAUCGGGCUCGGAUUCGCUUGGUGCAGGUCGGGAACCAAUUCGGCUGACACAGCCUCGUGACUUUUAAACCUUUAUUGGUUUGUGAGCAGGGAUUGGAUCCCGCCUUGCAUCAACUGAAUCGGAUCCUCGAGGUG
Short sequences
sequencetypearmstartend
UCGCUUGGUGCAGGUCGGGAA
miRNA1838
ATTCGCTTGGTGCAGGTC
primer5p1633
TCCGATTCAGTTGATGCAAG
primer3p108127

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR168a found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 138 nt
MFE = -69.60 kcal/mol

COMMENTS