miR166d
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed3.384441.558713.456951.44955
10day-seedling1.250610.6014223.087910.34201
14day-seedling2.432250.2209743.604790.806061
25day-aerial1.167980.5515522.93050.460536
35day-aerial1.361480.4805853.215830.46909
42day-rosette1.781630.7455683.590280.364514
42day-stem1.62990.06766553.264470.0169775
53day-rosette1.679260.06370533.521760.181692
53day-stem2.364410.9604853.781840.544819
53day-inflores1.59520.6117683.184640.64463
53day-silique2.927031.098494.069621.13554
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00031.017.157.04e-3-2.157.067.48e-3-2.13
21.00039.411.433.63e-4-3.4411.563.31e-4-3.48
31.00041.7317.465.56e-6-5.2516.699.48e-6-5.02
10day-seedling11.00030.5517.694.74e-6-5.3212.192.14e-4-3.67
2----N/D--N/D
31.00031.8820.516.69e-7-6.1713.87.02e-5-4.15
14day-seedling11.00028.6815.112.83e-5-4.558.462.83e-3-2.55
20.99532.5814.474.39e-5-4.3611.573.29e-4-3.48
30.99833.7315.941.59e-5-4.813.87.02e-5-4.15
25day-aerial10.99930.8417.983.87e-6-5.4112.222.09e-4-3.68
20.99835.4921.453.49e-7-6.4615.212.65e-5-4.58
31.00032.5718.692.36e-6-5.6313.131.12e-4-3.95
35day-aerial1----N/D--N/D
21.00030.3217.65.03e-6-5.311.473.53e-4-3.45
31.00033.0519.861.05e-6-5.9813.677.66e-5-4.12
42day-rosette10.99832.6319.091.80e-6-5.7511.982.47e-4-3.61
2----N/D--N/D
31.00029.1115.582.04e-5-4.6910.029.66e-4-3.02
42day-stem11.00029.3717.684.76e-1-5.3212.371.90e-1-3.72
20.99730.54183.82e-1-5.4212.451.79e-1-3.75
3----N/D--N/D
53day-rosette11.00031.9617.924.05e-6-5.3911.932.57e-4-3.59
21.00029.8817.65.05e-6-5.311.882.65e-4-3.58
31.00030.4117.525.34e-6-5.2710.865.39e-4-3.27
53day-stem10.99930.8817.465.56e-6-5.2510.945.10e-4-3.29
21.00031.7917.027.54e-6-5.1212.361.90e-4-3.72
31.00029.3311.722.96e-4-3.538.772.29e-3-2.64
53day-inflores10.99930.1816.798.82e-6-5.0511.643.14e-4-3.5
21.00030.3615.731.84e-5-4.7411.184.32e-4-3.36
30.99433.5519.721.16e-6-5.9415.132.79e-5-4.55
53day-silique11.00029.749.891.05e-3-2.985.941.62e-2-1.79
21.00036.4817.196.68e-6-5.1813.498.70e-5-4.06
31.00032.4713.58.61e-5-4.069.771.14e-3-2.94
NGS expression data
Expression of miR166d transcript in NGS data
Sequences
miRNA transcript
UGGUCAUUUGCUCCUCUCUCCUAUGUAUAAAUAUUCGCCUCACACAUAGACCUAUUUAGCUUCUUCUUCUUCUUCUUCUUCUGUCUACUUACAUAAAGUUAUCCUGCUUUGGUUUAGGGUUGAGAGGAAUAUUGUCUGGCUCGAGGUCAUGAAGAAGAUCGGUAGAUUGAUUCAUUUUAAAGAGUGAAAUCCCUAAAUGAUUCUCGGACCAGGCUUCAUUCCCCCCAACC
Short sequences
sequencetypearmstartend
UCGGACCAGGCUUCAUUCCCC
miRNA204224
GGTCATTTGCTCCTCTCTCCTATGT
primer5p226
TCCTCTCAACCCTAAACCAAAGC
primer3p106128

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR166d found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 230 nt
MFE = -52.33 kcal/mol

COMMENTS