miR163
DB statistics:
  • Sunday, April 5th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed5.384810.8237535.457320.963366
10day-seedling4.964620.2983646.772780.368358
14day-seedling5.156950.6912786.3281240.149495
25day-aerial4.673551.21516.243931.0418
35day-aerial5.152310.5935946.97268550.572699
42day-rosette5.288560.1742527.8026230.712615
42day-stem5.671410.3928777.1465150.918367
53day-rosette5.93140.4155997.7739050.305247
53day-stem5.674310.4913377.4371290.664997
53day-inflores5.676230.5723327.1362090.650872
53day-silique5.29760.5325496.4401930.510204
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00030.676.818.91e-3-2.056.729.46e-3-2.02
21.00035.057.087.41e-3-2.137.216.75e-3-2.17
31.00026.482.212.16e-1-0.671.443.69e-1-0.43
10day-seedling11.00018.886.021.54e-2-1.810.536.92e-1-0.16
21.00021.147.894.22e-3-2.372.082.37e-1-0.62
31.00017.746.371.21e-2-1.92-0.341.27e+00.1
14day-seedling10.99922.178.62.57e-3-2.591.962.57e-1-0.59
20.98923.815.71.93e-2-1.712.791.44e-1-0.84
30.99821.864.075.97e-2-1.221.932.63e-1-0.58
25day-aerial10.99917.844.993.15e-2-1.5-0.771.71e+00.23
20.99026.4112.371.89e-4-3.726.131.43e-2-1.84
31.00019.665.781.82e-2-1.740.228.60e-1-0.07
35day-aerial10.99619.144.683.90e-2-1.41-0.861.81e+00.26
20.99821.148.412.93e-3-2.532.282.06e-1-0.69
30.98918.255.063.01e-2-1.52-1.132.19e+00.34
42day-rosette10.99617.123.588.33e-2-1.08-3.521.15e+11.06
21.00019.45.023.08e-2-1.51-0.671.59e+00.2
30.99917.123.68.26e-2-1.08-1.973.92e+00.59
42day-stem10.99915.683.996.34e-1-1.24-1.322.59e+00.4
21.00018.385.841.75e-1-1.760.298.18e-1-0.87
30.99916.663.281.32e-1-0.99-3.358.17e+00.91
53day-rosette11.00016.432.381.92e-1-0.72-3.611.22e+11.09
21.00015.493.21.09e-1-0.96-2.525.72e+00.76
31.00017.965.072.97e-2-1.53-1.593.00e+00.48
53day-stem10.99716.583.161.12e-1-0.95-3.361.03e+11.01
20.99818.573.87.19e-2-1.14-0.861.81e+00.26
30.99820.963.359.80e-2-1.010.47.59e-1-0.12
53day-inflores10.99615.62.22.17e-1-0.66-2.957.72e+00.89
21.00019.975.342.46e-2-1.610.795.80e-1-0.24
30.99819.225.42.38e-2-1.620.815.72e-1-0.24
53day-silique11.00026.56.669.90e-3-22.711.53e-1-0.82
21.00022.93.618.18e-2-1.09-0.091.07e+00.03
31.00025.676.79.65e-3-2.022.961.28e-1-0.89

Nothern hybridization
NGS expression data
Expression of miR163 transcript in NGS data
Sequences
miRNA transcript
AAGUACCUUAGAUAAACCGACCAAAACCCGGUGGAUAAAAUCGAGUUCCAACCUCUUCAACGACAACGAUUUCAACACUCUCUUCCAGGAACAACUUCCUCCAGGCAGAUGAUACUAAAGUGCUGGAGUUCCCGGUUCCUGAGAGUGAGUCCAUAUCAAAAUGCGCAUUCGUUAUCACUUGGUUGAACCCAUUUGGGGAUUUAAAUUUGGAGGUGAAAUGGAACGCGUAAUUGAUGACUCCUACGUGGAACCUCUUCUUAGGAAGAGCACGGUCGAAGAAGUAACUGCGCAGUGCUUAAAUCGUAGAUGCUAAAGUCGUUGAAGAGGACUUGGAACUUCGAUAUUAUCCCCCGUGU
Short sequences
sequencetypearmstartend
UUGAAGAGGACUUGGAACUUCGAU
miRNA319342
AGTACCTTAGATAAACCGACCAAAACC
primer5p228
AACCGGGAACTCCAGCACTT
primer3p118137

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR163 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 356 nt
MFE = -125.30 kcal/mol

COMMENTS