miR161
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed5.467930.3592395.540440.488698
10day-seedling3.519540.4201355.32770.291271
14day-seedling3.49060.4574234.663950.580587
25day-aerial3.618850.1980335.419480.0900417
35day-aerial3.47330.224955.370960.285342
42day-rosette3.499480.4152915.299130.538939
42day-stem3.544460.1832885.262130.252108
53day-rosette3.716030.6637065.558540.642759
53day-stem3.748520.2627394.946060.586916
53day-inflores3.969680.2265465.40710.135249
53day-silique4.16830.09807315.310890.0665165
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00028.664.813.57e-2-1.454.723.80e-2-1.42
21.00034.386.41.19e-2-1.936.531.08e-2-1.97
31.00028.344.065.98e-2-1.223.291.02e-1-0.99
10day-seedling11.00022.839.979.98e-4-34.474.50e-2-1.35
21.00025.412.152.20e-4-3.666.341.23e-2-1.91
31.00023.9312.571.65e-4-3.785.851.73e-2-1.76
14day-seedling10.99926.0412.471.76e-4-3.755.831.76e-2-1.75
20.00030.712.591.62e-4-3.799.691.21e-3-2.92
30.99727.699.91.04e-3-2.987.774.59e-3-2.34
25day-aerial11.00023.5210.666.16e-4-3.214.913.34e-2-1.48
20.99625.711.663.09e-4-3.515.422.34e-2-1.63
30.99824.8510.974.98e-4-3.35.412.35e-2-1.63
35day-aerial10.99924.5610.119.07e-4-3.044.574.21e-2-1.38
20.99925.2912.571.64e-4-3.786.441.15e-2-1.94
30.21424.3911.194.27e-4-3.375.013.11e-2-1.51
42day-rosette10.99824.310.765.76e-4-3.243.667.93e-2-1.1
20.99827.613.221.05e-4-3.987.535.42e-3-2.27
31.00024.4210.95.25e-4-3.285.332.49e-2-1.6
42day-stem10.99622.7311.44.75e-1-3.325.731.88e-1-1.72
20.99724.712.162.19e-1-3.666.621.23e-1-2
30.99824.371.994.92e-1-3.384.683.90e-1-1.49
53day-rosette11.00022.418.363.04e-3-2.522.371.93e-1-0.71
21.00024.4312.152.21e-4-3.666.431.16e-2-1.94
31.00025.1112.222.10e-4-3.685.562.12e-2-1.67
53day-stem10.99924.9411.523.42e-4-3.4753.13e-2-1.5
20.99825.8411.064.68e-4-3.336.411.18e-2-1.93
30.99927.439.831.10e-3-2.966.878.52e-3-2.07
53day-inflores10.99824.2910.95.23e-4-3.285.751.86e-2-1.73
21.00024.469.841.09e-3-2.965.282.57e-2-1.59
30.99223.279.441.44e-3-2.844.853.47e-2-1.46
53day-silique11.00029.569.711.20e-3-2.925.761.85e-2-1.73
21.00028.359.061.87e-3-2.735.362.44e-2-1.61
31.00028.429.451.43e-3-2.845.721.90e-2-1.72
NGS expression data
Expression of miR161 transcript in NGS data
Sequences
miRNA transcript
UGCUUGAUCUCGGUUUUUGACCAGUUUAUUGCGUCGAUCAAUGCAUUGAAAGUGACUACAUCGGGGUUCCGAUUUUUUUUGUUCUUCAUAUGAUGAAGCGGAAACAGUAAUCAACCCUGGUUUAGUCACUUUCACUGCAUUAAUCAAUGCAUUUGUAAAAAGAGGGAAAAGCA
Short sequences
sequencetypearmstartend
UGAAAGUGACUACAUCGGGGU
miRNA4767
UCAAUGCAUUGAAAGUGACUA
miRNA3858
TGACCAGTTTATTGCGTCGATCA
primer5p1840
TGCTTTTCCCTCTTTTTACAAATGC
primer3p149173

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR161 found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 173 nt
MFE = -65.20 kcal/mol

COMMENTS