miR160b
DB statistics:
  • Tuesday, April 7th 2020:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed4.89280.7642584.965310.683309
10day-seedling4.103810.4362065.911970.441842
14day-seedling4.211660.660525.486080.127499
25day-aerial3.720470.06657085.467720.0489343
35day-aerial3.542570.1172925.504750.102323
42day-rosette3.366330.5511345.278410.55466
42day-stem3.667940.138495.390560.16229
53day-rosette3.165790.7169595.00830.657711
53day-stem3.979151.198175.413750.889925
53day-inflores3.949790.1664075.383360.235173
53day-silique3.792580.3748924.935170.41505
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00032.518.652.49e-3-2.68.562.64e-3-2.58
21.00032.054.085.93e-2-1.234.215.40e-2-1.27
31.00032.558.273.23e-3-2.497.55.51e-3-2.26
10day-seedling11.00021.098.233.33e-3-2.482.741.50e-1-0.82
21.00024.3711.124.49e-4-3.355.312.52e-2-1.6
31.00020.889.511.37e-3-2.862.81.44e-1-0.84
14day-seedling10.99925.211.633.16e-4-3.54.983.16e-2-1.5
20.99926.438.323.12e-3-2.515.422.34e-2-1.63
30.99924.536.749.38e-3-2.034.64.13e-2-1.38
25day-aerial11.00023.6110.765.78e-4-3.2453.13e-2-1.5
21.00025.1911.154.40e-4-3.364.913.33e-2-1.48
30.99924.6610.785.69e-4-3.245.222.69e-2-1.57
35day-aerial10.99924.6110.168.76e-4-3.064.624.07e-2-1.39
21.00023.8111.094.59e-4-3.344.963.22e-2-1.49
30.99624.6911.53.46e-4-3.465.312.52e-2-1.6
42day-rosette11.00024.6811.144.44e-4-3.354.036.11e-2-1.21
20.99927.7613.389.40e-5-4.037.694.86e-3-2.31
31.00024.4210.95.25e-4-3.285.332.49e-2-1.6
42day-stem10.99922.261.566.66e-1-3.185.252.62e-1-1.58
20.99824.0211.473.52e-1-3.455.921.65e-1-1.78
31.00024.5511.174.36e-1-3.364.863.44e-1-1.46
53day-rosette11.00024.1410.099.17e-4-3.044.15.82e-2-1.23
21.00025.713.419.18e-5-4.047.74.83e-3-2.32
31.00027.614.713.73e-5-4.438.053.77e-3-2.42
53day-stem10.99924.7411.313.93e-4-3.414.793.60e-2-1.44
20.99927.8613.091.15e-4-3.948.432.89e-3-2.54
30.99723.145.532.16e-2-1.672.581.67e-1-0.78
53day-inflores10.99923.249.851.08e-3-2.974.73.86e-2-1.41
21.00025.410.775.73e-4-3.246.211.35e-2-1.87
30.99923.619.781.14e-3-2.945.192.74e-2-1.56
53day-silique11.00029.079.221.68e-3-2.785.272.59e-2-1.59
21.00030.611.313.94e-4-3.47.65.14e-3-2.29
31.00030.4111.443.61e-4-3.447.74.79e-3-2.32
NGS expression data
Expression of miR160b transcript in NGS data
Sequences
miRNA transcript
GUCGUGCCUGGCUCCCUGUAUGCCACAAGAAAACAUCGAUUUAGUUUCAAAAUCGAUCACUAGUGGCGUACAGAGUAGUCAAGCAUGACCAAAGCUUAUCAUAAUAUCUA
Short sequences
sequencetypearmstartend
UGCCUGGCUCCCUGUAUGCCA
miRNA525
TGCCTGGCTCCCTGTATG
primer5p522
GATATTATGATAAGCTTTGGTCATGC
primer3p83108

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR160b found in PubMed

SHORTCUTS

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 110 nt
MFE = -43.10 kcal/mol

COMMENTS